Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 5.5e-212 740.7 378 100.0
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 2.0e-105 386.7 339 64.3
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 9.7e-92 341.3 333 59.5
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.8e-91 339.7 338 59.2
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.4e-90 337.4 337 57.6
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 6.9e-90 335.1 337 57.3
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 2.6e-81 306.6 379 51.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 3.8e-80 302.8 355 52.4
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 8.8e-77 291.6 345 53.9
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 1.7e-75 287.3 344 52.9
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.6e-68 263.5 337 48.1
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.3e-68 263.1 346 48.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.8e-67 259.2 331 48.9
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.8e-67 259.2 338 48.2
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 6.3e-67 258.8 338 48.2
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-66 258.1 353 45.6
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.4e-66 256.9 338 47.6
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 9.1e-66 255.0 338 48.2
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.2e-65 254.6 344 46.8
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 7.7e-65 251.9 340 48.5
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.0e-64 251.5 332 47.9
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 1.5e-63 247.7 329 46.8
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 3.2e-63 246.5 351 45.6
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.2e-63 245.4 353 44.2
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 2.1e-62 243.8 185 71.9
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.3e-61 240.4 360 44.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 4.0e-61 239.6 350 46.6
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 2.6e-60 236.9 359 45.1
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 2.8e-59 233.4 318 48.7
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 8.3e-59 231.9 351 47.0
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.4e-58 230.3 341 45.5
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 2.4e-58 230.3 348 45.4
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.1e-58 229.9 339 45.1
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 9.1e-58 228.4 339 45.7
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 4.5e-57 226.1 314 48.7
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 5.0e-56 222.6 321 48.6
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.2e-55 219.9 364 44.8
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.8e-54 216.9 338 42.9
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.8e-54 216.9 341 46.0
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.4e-53 214.5 352 42.9
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.8e-53 214.2 317 47.0
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-53 213.8 339 45.7
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.0e-53 213.4 337 43.9
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 3.0e-53 213.4 287 45.6
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.4e-52 209.9 339 44.8
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 4.4e-52 209.5 339 43.7
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.8e-50 204.1 277 47.7
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.2e-49 201.4 314 44.3
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 3.5e-49 199.9 358 41.3
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 3.8e-48 196.4 285 44.9
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.5e-47 194.5 352 42.0
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 3.3e-47 193.4 215 54.9
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 4.3e-47 193.0 347 40.1
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 5.6e-47 192.6 272 47.1
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.2e-46 191.4 230 51.3
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.6e-46 189.9 273 46.2
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 2.6e-44 183.7 351 39.6
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 9.8e-44 181.8 265 47.5
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.3e-43 181.4 332 41.6
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.4e-42 177.9 351 39.9
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.4e-42 177.2 350 39.7
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.2e-41 174.9 216 50.0
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 3.5e-41 173.3 344 39.5
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 7.8e-41 172.2 351 38.7
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 3.0e-40 170.2 207 52.2
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 3.3e-39 166.8 350 38.0
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 4.3e-39 166.4 343 38.2
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 2.1e-38 164.1 351 38.2
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 2.8e-38 163.7 341 36.7
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 3.6e-38 163.3 316 39.2
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 8.0e-38 162.2 315 38.7
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.8e-37 161.0 347 37.5
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.5e-36 157.9 315 41.6
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-36 157.5 275 41.1
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 1.3e-35 154.8 343 36.7
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 6.4e-35 152.5 343 36.4
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 8.3e-35 152.1 343 37.3
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 1.9e-34 151.0 310 41.0
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 3.2e-34 150.2 333 36.3
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 5.4e-34 149.4 333 36.3
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 7.0e-34 149.1 327 37.6
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 2.3e-32 144.1 270 41.5
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 3.9e-32 143.3 336 36.9
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 3.9e-32 143.3 321 37.1
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 6.6e-32 142.5 278 36.7
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 8.6e-32 142.1 337 38.0
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.9e-31 141.0 311 36.7
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 6.2e-30 136.0 298 36.6
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.1e-29 135.2 348 32.8
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.4e-29 134.8 318 36.8
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.3e-29 134.0 331 35.0
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 3.1e-29 133.7 294 36.7
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.0e-29 133.3 332 34.9
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 5.2e-29 132.9 297 38.0
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 5.2e-29 132.9 276 38.0
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 8.9e-29 132.1 338 35.5
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-28 131.0 333 35.4
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 7.5e-28 129.0 320 36.2
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 9.9e-28 128.6 328 33.5
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.7e-27 127.9 331 32.0
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.9e-27 127.1 326 34.4
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 3.7e-27 126.7 276 37.7
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.1e-26 125.2 360 31.7
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.1e-26 125.2 313 35.1
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 2.4e-26 124.0 338 32.8
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.2e-26 123.6 321 32.4
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.4e-26 122.9 349 32.7
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 7.1e-26 122.5 321 33.6
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.1e-26 122.5 345 33.0
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 1.2e-25 121.7 326 34.0
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.6e-25 121.3 315 35.2
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.6e-25 121.3 303 35.0
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.7e-25 120.6 327 32.1
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.5e-25 120.2 318 34.6
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 7.8e-25 119.0 352 32.7
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 7.8e-25 119.0 137 51.8
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 7.8e-25 119.0 317 34.7
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 1.3e-24 118.2 326 34.0
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 3.0e-24 117.1 316 35.1
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 8.6e-24 115.5 293 33.8
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 8.6e-24 115.5 294 34.7
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 8.6e-24 115.5 295 34.6
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.1e-23 115.2 295 34.6
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.5e-23 114.8 292 33.2
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.9e-23 114.4 343 31.5
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.5e-23 114.0 170 45.9
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 5.6e-23 112.8 313 33.2
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 5.6e-23 112.8 264 35.6
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 7.3e-23 112.5 330 30.6
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.2e-22 111.7 272 36.8
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.6e-22 111.3 342 31.6
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 2.8e-22 110.5 330 30.6
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 3.6e-22 110.2 295 33.9
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.1e-21 108.6 330 30.3
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.0e-21 106.7 283 34.6
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.8e-21 105.9 208 38.5
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.5e-20 104.8 286 35.0
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 4.4e-20 103.2 313 32.3
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 5.8e-20 102.8 171 40.9
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 7.6e-20 102.4 163 40.5
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 9.9e-20 102.1 333 31.2
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.7e-19 101.3 150 43.3
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 6.4e-19 99.4 333 30.3
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 6.4e-19 99.4 240 36.2
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 1.9e-18 97.8 266 33.5
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.1e-18 96.7 197 38.1
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 1.0e-16 92.0 222 35.1
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 8.7e-16 89.0 315 27.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.1e-14 84.3 147 41.5
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.4e-13 80.9 110 54.5
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.5e-12 78.2 154 39.6
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 3.4e-12 77.0 105 51.4
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.3e-11 75.1 90 47.8
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 1.3e-11 75.1 90 47.8
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.6e-09 68.2 210 31.9
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 1.0e-08 65.5 156 32.1
SEGI_39984 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 3.3e-07 60.5 224 28.1
MD06G1228900 Malus domestica HOM05D002346 ORTHO05D002452 5.6e-07 59.7 178 29.8
Gohir.D01G141300 Gossypium hirsutum HOM05D002346 ORTHO05D002452 9.6e-07 58.9 190 31.1
Haze_18893 Corylus avellana HOM05D002346 ORTHO05D002452 1.3e-06 58.5 173 30.6
Gorai.002G173700 Gossypium raimondii HOM05D002346 ORTHO05D002452 1.3e-06 58.5 190 31.1
Oeu062649.1 Olea europaea HOM05D002346 ORTHO05D002452 1.3e-06 58.5 192 31.2
Gohir.A01G148700 Gossypium hirsutum HOM05D002346 ORTHO05D002452 1.6e-06 58.2 229 29.3
Cc11_g08030 Coffea canephora HOM05D002346 ORTHO05D002452 2.1e-06 57.8 168 29.2
DCAR_030257 Daucus carota HOM05D002346 ORTHO05D002452 2.1e-06 57.8 215 30.2
Oeu046627.1 Olea europaea HOM05D002346 ORTHO05D002452 2.1e-06 57.8 178 27.5
Prupe.5G235300 Prunus persica HOM05D002346 ORTHO05D002452 2.1e-06 57.8 251 27.9
Sp3g15990 Schrenkiella parvula HOM05D002346 ORTHO05D002452 2.1e-06 57.8 182 30.8
Aa31LG8G4750 Aethionema arabicum HOM05D000247 ORTHO05D003114 2.8e-06 57.4 156 31.4
MD16G1020800 Malus domestica HOM05D002346 ORTHO05D002452 2.8e-06 57.4 168 28.6
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 2.8e-06 57.4 167 29.9
HPP92_023490 Vanilla planifolia HOM05D002346 ORTHO05D002452 2.8e-06 57.4 164 29.3
Ah.09g229090 Amaranthus hybridus HOM05D001047 ORTHO05D000768 3.6e-06 57.0 162 31.5
BcaB06g25850 Brassica carinata HOM05D002346 ORTHO05D002452 3.6e-06 57.0 181 30.4
A05p31930 Brassica napus HOM05D002346 ORTHO05D002452 3.6e-06 57.0 167 31.1
ClCG04G010520 Citrullus lanatus HOM05D002346 ORTHO05D002452 6.2e-06 56.2 203 28.6
AL3G31030 Arabidopsis lyrata HOM05D002346 ORTHO05D002452 8.1e-06 55.8 200 29.5
Peaxi162Scf00376g00327 Petunia axillaris HOM05D002346 ORTHO05D002452 8.1e-06 55.8 164 30.5


User provided reference genes

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