Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.6e-177 626.7 511 100.0
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 2.8e-166 589.3 516 94.8
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 9.4e-90 335.1 523 65.0
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.6e-89 334.3 529 62.6
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 3.6e-89 333.2 510 71.4
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.8e-88 330.9 531 61.2
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 6.7e-88 328.9 590 58.5
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 7.4e-87 325.5 519 65.7
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.3e-86 324.7 481 64.7
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.7e-86 323.2 532 58.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.7e-86 323.2 436 70.9
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.8e-85 320.9 543 61.1
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.4e-85 320.5 545 64.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 3.1e-85 320.1 543 61.3
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.5e-84 316.2 524 64.1
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 5.9e-84 315.8 515 61.7
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.8e-83 313.2 551 63.3
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 5.0e-83 312.8 560 57.7
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 5.0e-83 312.8 559 62.8
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 5.5e-82 309.3 513 64.7
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 7.2e-82 308.9 513 68.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 7.2e-82 308.9 513 66.5
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.7e-81 307.0 542 63.7
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.6e-81 306.6 530 66.6
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.6e-81 306.6 516 57.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.6e-81 306.6 432 73.8
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.7e-81 306.2 563 63.1
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 6.1e-81 305.8 161 94.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.4e-80 304.7 524 64.9
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.3e-80 303.9 516 69.8
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.0e-80 303.5 517 65.4
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 5.2e-80 302.8 513 60.6
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 5.2e-80 302.8 513 64.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 6.7e-80 302.4 422 62.6
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.7e-80 302.4 551 60.8
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 8.8e-80 302.0 526 59.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 2.0e-79 300.8 533 57.4
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 7.4e-79 298.9 538 61.3
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.8e-78 297.0 537 65.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.8e-78 297.0 518 64.9
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.8e-78 296.2 543 65.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 8.2e-78 295.4 508 62.2
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.1e-77 295.0 515 62.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.4e-77 294.7 541 61.2
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.8e-77 294.3 507 66.7
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.1e-77 293.5 530 71.1
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 3.1e-77 293.5 558 59.9
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.1e-77 293.1 538 65.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 7.0e-77 292.4 525 60.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 9.1e-77 292.0 568 58.1
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.0e-76 290.8 555 51.7
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 5.9e-76 289.3 554 65.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.9e-76 289.3 523 62.0
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.9e-76 289.3 553 65.3
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.3e-75 288.1 541 59.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.3e-75 288.1 548 46.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.3e-75 288.1 530 59.4
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.2e-75 287.3 543 66.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-75 287.0 539 62.7
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.0e-75 286.2 544 66.7
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 5.0e-75 286.2 515 62.1
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 6.5e-75 285.8 539 62.0
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.9e-74 284.3 601 61.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 1.9e-74 284.3 511 53.6
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.5e-74 283.9 541 62.7
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 4.2e-74 283.1 513 65.1
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 7.2e-74 282.3 535 60.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.6e-73 281.2 540 67.0
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.7e-73 280.4 518 62.7
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 3.6e-73 280.0 547 60.1
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.0e-72 278.5 598 62.2
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 2.3e-72 277.3 169 84.6
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.0e-72 276.9 598 62.0
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 4.0e-72 276.6 173 81.5
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.2e-71 275.0 173 81.5
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.2e-71 275.0 175 82.3
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.5e-71 274.6 169 82.8
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.3e-71 273.5 433 73.7
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.7e-71 271.9 530 62.3
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.8e-70 269.6 171 78.4
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-69 268.5 535 62.1
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.4e-69 268.1 532 58.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.4e-69 267.3 172 80.2
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.1e-69 266.5 159 83.0
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 9.1e-69 265.4 163 81.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 3.5e-68 263.5 492 51.2
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.5e-68 263.1 556 61.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.7e-67 261.2 518 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.9e-67 260.4 171 78.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 5.0e-67 259.6 164 81.7
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 6.5e-67 259.2 431 70.1
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.1e-66 258.5 165 81.8
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.1e-66 258.5 167 79.6
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.1e-66 258.5 167 79.6
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.1e-66 258.5 534 60.7
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 3.2e-66 256.9 167 79.0
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 4.2e-66 256.5 513 48.9
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 7.2e-66 255.8 162 79.6
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 3.6e-65 253.4 424 72.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 8.0e-65 252.3 424 71.9
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 8.0e-65 252.3 568 53.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 1.8e-64 251.1 420 71.2
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.8e-64 251.1 167 77.2
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.3e-64 250.8 419 69.7
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.3e-64 250.8 157 79.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.2e-64 249.6 156 80.1
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 6.8e-64 249.2 172 75.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 8.8e-64 248.8 168 76.2
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.2e-63 248.4 428 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.5e-63 248.1 152 82.9
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.0e-63 247.7 519 61.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 3.4e-63 246.9 158 79.7
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 4.4e-63 246.5 179 73.2
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.3e-62 245.0 168 76.2
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-62 243.8 177 72.9
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.1e-61 240.0 156 78.2
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 2.7e-60 237.3 135 85.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 3.5e-60 236.9 428 57.7
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 7.7e-60 235.7 170 73.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.0e-59 235.3 134 85.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-59 235.3 134 85.8
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-59 233.4 133 85.7
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-58 231.9 430 55.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-58 231.9 132 86.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-58 230.3 134 84.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-58 230.3 133 85.0
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.2e-58 229.2 144 81.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-57 227.6 132 84.8
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-57 227.6 124 89.5
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 6.1e-57 226.1 509 47.9
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-56 224.9 133 82.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-56 224.6 129 85.3
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-56 224.2 177 71.8
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 5.2e-56 223.0 165 72.7
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-55 221.9 129 84.5
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-55 221.5 132 82.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 4.4e-55 219.9 178 69.7
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-54 218.0 130 82.3
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 3.7e-54 216.9 135 83.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.4e-53 213.0 128 84.4
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-53 213.0 152 75.0
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 5.4e-53 213.0 152 75.0
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.3e-50 203.4 178 64.0
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-48 198.4 161 64.6
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.8e-48 198.0 400 68.2
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 4.4e-47 193.4 164 66.5
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 8.3e-46 189.1 112 84.8
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.3e-42 177.2 99 88.9
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-41 174.9 132 70.5
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-40 171.8 128 73.4
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 2.3e-40 171.0 106 82.1
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 2.6e-39 167.5 132 70.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 3.7e-38 163.7 103 77.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.7e-38 163.7 164 59.1
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.3e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.8e-32 144.8 158 52.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.0e-31 141.4 84 82.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-30 138.7 84 81.0
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 5.4e-29 133.3 112 55.4
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.6e-28 131.7 162 50.6
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.6e-28 130.2 70 92.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 8.6e-27 125.9 84 73.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-26 124.4 84 72.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.1e-24 117.5 66 87.9
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.6e-23 114.4 514 42.8
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.9e-23 112.5 443 56.2
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-22 111.3 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-21 109.0 67 79.1
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.3e-19 101.3 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 3.6e-17 94.0 56 85.7
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.9e-16 89.7 54 83.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.9e-14 84.3 56 76.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 8.7e-11 72.8 186 39.2
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 9.6e-10 69.3 47 72.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-09 68.2 72 51.4
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-08 65.9 52 65.4
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-07 60.8 64 59.4


User provided reference genes

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