Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 8.2e-100 367.5 245 100.0
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.7e-57 226.9 294 52.0
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.5e-56 223.0 291 57.4
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.1e-55 219.9 288 55.2
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.8e-54 216.9 307 49.2
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.8e-54 216.9 302 53.6
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 2.3e-54 216.5 297 56.9
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.3e-54 216.5 294 49.3
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 3.0e-54 216.1 288 54.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.0e-54 215.7 293 50.2
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.2e-54 215.3 288 50.7
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.2e-54 215.3 293 50.2
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 8.8e-54 214.5 286 56.6
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.6e-53 213.0 305 50.5
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.4e-53 212.2 278 58.3
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 7.5e-53 211.5 302 52.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.3e-52 210.7 300 53.7
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.7e-52 209.1 275 58.9
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.3e-52 208.4 305 51.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 3.1e-51 206.1 318 51.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 9.2e-51 204.5 293 51.2
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.0e-50 203.4 305 49.2
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 2.0e-50 203.4 298 53.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 3.5e-50 202.6 312 51.6
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.9e-50 201.8 304 49.7
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.3e-49 200.7 286 52.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 1.3e-49 200.7 300 49.0
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.3e-49 199.9 286 53.5
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 2.3e-49 199.9 288 51.7
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.8e-49 199.1 311 49.2
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 3.8e-49 199.1 296 54.7
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.0e-49 198.7 299 55.5
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 6.6e-49 198.4 292 53.4
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.6e-49 198.0 293 52.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-48 197.6 286 57.7
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.5e-48 196.4 287 54.0
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 4.3e-48 195.7 284 53.2
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 5.6e-48 195.3 276 48.9
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 9.5e-48 194.5 297 49.2
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 9.5e-48 194.5 300 46.3
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 9.5e-48 194.5 301 46.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 1.2e-47 194.1 296 57.8
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.1e-47 193.4 297 51.9
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.6e-47 192.6 286 46.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.6e-47 192.6 292 49.7
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-47 192.6 298 47.0
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-47 192.6 298 47.0
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 4.7e-47 192.2 292 51.0
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 4.7e-47 192.2 288 58.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 6.1e-47 191.8 287 56.8
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.1e-47 191.8 280 53.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 8.0e-47 191.4 300 48.7
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.0e-47 191.4 311 51.8
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.4e-46 190.7 306 52.6
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.8e-46 190.3 281 49.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 2.3e-46 189.9 285 51.2
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.3e-46 189.9 312 49.7
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.0e-46 189.5 292 53.4
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 3.0e-46 189.5 289 60.2
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 5.2e-46 188.7 278 54.0
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.0e-45 186.8 302 50.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.0e-45 186.8 307 50.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.6e-45 186.4 300 54.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.6e-45 186.4 300 54.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.6e-45 186.4 290 50.7
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.4e-45 186.0 291 53.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 9.8e-45 184.5 299 48.2
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-44 183.7 291 53.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.2e-44 183.3 320 50.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.7e-44 182.6 296 54.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 4.9e-44 182.2 300 50.0
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 6.4e-44 181.8 296 42.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 8.3e-44 181.4 285 53.7
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.4e-43 180.6 308 48.4
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-43 180.6 303 48.2
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.8e-43 180.3 320 46.6
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.8e-43 180.3 284 51.1
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-43 179.9 293 51.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-43 179.9 293 51.5
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.2e-43 179.5 297 55.9
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 5.4e-43 178.7 320 46.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 7.0e-43 178.3 316 50.3
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 9.2e-43 177.9 246 51.6
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.2e-42 177.6 292 52.1
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.5e-42 176.0 299 48.5
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.5e-42 176.0 286 53.5
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.6e-42 175.6 281 52.0
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.9e-42 175.3 293 49.5
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 7.8e-42 174.9 309 50.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-41 174.1 284 56.7
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 6.6e-41 171.8 294 47.6
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.6e-41 171.8 300 54.7
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 6.6e-41 171.8 300 49.7
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 6.6e-41 171.8 289 52.2
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.5e-40 170.6 295 50.2
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.6e-39 167.2 310 51.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.8e-39 166.4 307 48.5
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.2e-39 165.2 301 48.8
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.1e-38 164.5 280 51.1
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.1e-38 164.5 280 51.1
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.4e-38 164.1 283 48.8
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.8e-38 163.7 292 43.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.8e-38 163.7 300 49.3
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.8e-38 163.7 282 50.0
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.3e-38 163.3 301 48.5
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.3e-38 163.3 299 53.2
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.3e-38 163.3 293 47.1
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 6.8e-38 161.8 294 50.3
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 1.5e-37 160.6 281 47.3
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 1.5e-37 160.6 281 47.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.6e-37 159.8 285 44.9
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.4e-37 159.5 295 45.8
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.3e-36 157.5 278 45.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.2e-36 156.8 299 48.5
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.9e-36 156.4 299 54.5
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 6.4e-36 155.2 301 53.8
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.1e-35 154.5 300 46.0
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.9e-35 153.7 308 46.1
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 3.2e-35 152.9 289 50.2
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.1e-35 152.5 297 48.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 4.1e-35 152.5 301 49.8
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.4e-35 152.1 301 39.9
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 9.2e-35 151.4 409 36.2
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 9.2e-35 151.4 298 46.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 9.2e-35 151.4 347 42.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 3.5e-34 149.4 292 44.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.0e-33 146.4 186 55.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 5.0e-33 145.6 279 43.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.1e-32 144.4 276 47.1
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-32 143.3 300 50.7
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.5e-32 143.3 265 44.9
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 7.3e-32 141.7 249 46.2
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-31 140.6 273 46.9
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-30 137.9 281 47.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.0e-30 136.0 272 46.3
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 4.0e-30 136.0 281 46.3
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.5e-29 134.0 283 45.2
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 4.4e-29 132.5 191 52.9
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.7e-28 130.6 283 45.2
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 6.4e-28 128.6 142 52.1
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.4e-28 128.6 131 51.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.1e-26 123.6 279 43.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.3e-24 115.9 124 50.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.1e-23 113.6 260 43.5
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.7e-23 112.5 198 62.1
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 6.2e-23 112.1 186 48.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.4e-22 110.2 301 36.2
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.1e-22 109.8 191 47.6
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.0e-22 109.4 130 47.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.2e-22 109.0 132 53.8
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 6.8e-22 108.6 133 46.6
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.6e-21 106.7 75 64.0
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.6e-21 106.7 303 37.6
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 7.6e-21 105.1 67 79.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 7.6e-21 105.1 65 83.1
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.4e-19 100.1 72 68.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.4e-19 99.0 189 42.3
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 1.1e-16 91.3 63 71.4
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.3e-16 89.7 98 57.1
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.3e-16 89.4 68 69.1
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 7.3e-16 88.6 62 74.2
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 1.2e-15 87.8 77 58.4
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 4.7e-15 85.9 306 30.7
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.4e-14 84.3 202 50.0
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-14 83.6 68 67.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.9e-14 82.0 158 47.5
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.9e-12 76.6 60 66.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.9e-11 73.9 309 33.0
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.4e-11 72.4 45 82.2
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.3e-09 67.8 129 35.7
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 6.6e-09 65.5 123 38.2
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.6e-07 59.7 52 50.0
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.1e-06 58.2 62 53.2


User provided reference genes

Program Settings