Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.6e-269 932.2 461 100.0
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 8.3e-170 600.9 448 67.6
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 5.4e-169 598.2 454 66.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 2.7e-168 595.9 450 66.2
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 5.0e-167 591.7 461 64.4
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 9.8e-163 577.4 451 64.1
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 4.9e-162 575.1 441 65.8
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 4.1e-161 572.0 441 65.5
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 5.9e-160 568.2 450 63.1
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.3e-159 567.0 451 64.3
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.9e-159 565.8 451 64.3
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.1e-158 563.9 461 61.4
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.1e-158 563.9 454 63.0
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.5e-158 563.5 452 63.1
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.9e-158 563.1 452 63.1
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 2.5e-158 562.8 447 62.6
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 2.5e-158 562.8 447 62.6
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.3e-158 562.4 452 62.8
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 4.7e-157 558.5 449 63.3
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 4.7e-157 558.5 465 61.5
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.0e-156 557.4 452 62.4
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 1.4e-156 557.0 420 65.5
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 5.2e-156 555.1 448 61.8
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 5.2e-156 555.1 440 65.2
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 2.0e-155 553.1 436 64.0
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.4e-155 552.4 443 63.2
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.4e-155 552.4 449 63.5
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 1.7e-154 550.1 436 62.4
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.9e-154 549.3 440 64.3
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 2.9e-154 549.3 453 61.4
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.9e-154 549.3 432 64.4
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 3.7e-154 548.9 410 66.8
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.1e-153 547.4 447 64.7
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.1e-153 545.4 410 66.3
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 7.0e-153 544.7 451 62.3
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 7.0e-153 544.7 444 62.2
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.6e-152 543.5 451 60.1
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 3.5e-152 542.3 410 66.1
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 3.0e-151 539.3 439 63.8
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 3.9e-151 538.9 439 63.1
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.9e-151 538.9 419 64.7
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.1e-150 537.3 453 61.8
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-150 537.3 437 62.9
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.1e-150 537.3 439 62.0
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 1.5e-150 537.0 450 61.6
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 2.5e-150 536.2 437 62.5
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 3.3e-150 535.8 439 64.0
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 4.3e-150 535.4 419 65.6
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 5.6e-150 535.0 441 60.3
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 7.3e-150 534.6 438 61.6
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.6e-149 533.5 419 64.2
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.1e-149 533.1 450 60.9
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 3.6e-149 532.3 439 63.8
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 8.0e-149 531.2 441 61.0
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.4e-148 530.4 424 63.2
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 3.1e-148 529.3 448 62.9
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 5.2e-148 528.5 450 60.7
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 6.8e-148 528.1 444 61.7
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 2.6e-147 526.2 451 61.6
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 7.5e-147 524.6 455 58.0
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.9e-146 522.7 439 61.5
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 4.9e-146 521.9 425 60.2
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 6.4e-146 521.5 456 56.4
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 2.4e-145 519.6 540 53.1
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.2e-144 517.3 442 60.6
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 7.8e-144 514.6 451 57.2
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 3.9e-143 512.3 442 60.0
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.1e-142 510.8 452 58.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.9e-142 510.0 430 61.9
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 5.6e-142 508.4 459 57.3
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.2e-141 507.3 452 57.3
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.2e-141 507.3 449 57.9
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 7.5e-139 498.0 449 59.9
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 6.4e-138 495.0 445 57.3
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.4e-137 493.8 449 56.6
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.2e-136 490.7 441 56.5
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.6e-136 490.3 453 56.5
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.1e-136 490.0 433 57.7
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 7.8e-136 488.0 426 60.3
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.3e-135 487.3 451 56.5
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.9e-135 485.7 439 59.0
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.5e-134 483.8 452 54.4
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.9e-134 483.4 433 58.2
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.2e-133 480.7 452 54.6
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 4.7e-133 478.8 446 54.0
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-132 477.2 446 53.8
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.8e-132 476.9 452 53.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-132 476.9 445 54.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.8e-132 476.9 445 54.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.2e-132 475.3 429 54.5
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 2.0e-131 473.4 447 52.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 7.6e-131 471.5 449 52.8
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 3.8e-130 469.2 451 53.4
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 8.4e-130 468.0 444 54.1
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.4e-129 467.2 448 55.1
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 5.4e-129 465.3 449 52.8
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 9.2e-129 464.5 445 53.3
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-128 463.0 451 52.1
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.0e-127 461.1 447 52.8
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.7e-127 460.3 433 53.6
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 2.3e-127 459.9 453 54.5
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 3.0e-127 459.5 368 64.1
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.0e-127 459.5 452 52.9
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-126 457.2 447 52.6
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 7.3e-126 454.9 460 51.7
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 4.7e-125 452.2 445 53.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-124 450.7 453 51.2
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-124 450.7 448 51.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 6.9e-124 448.4 439 55.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 7.1e-121 438.3 411 54.7
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 9.3e-121 438.0 453 51.0
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 3.3e-118 429.5 439 53.5
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-117 426.4 406 54.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.9e-113 413.7 349 61.6
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.5e-112 409.5 365 59.5
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.6e-109 399.4 317 59.3
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 4.0e-108 396.0 417 52.5
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 5.3e-108 395.6 443 51.2
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 3.4e-107 392.9 314 63.1
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 5.5e-105 385.6 434 51.2
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 2.7e-104 383.3 334 59.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 1.9e-102 377.1 335 59.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.4e-100 370.9 460 44.6
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.3e-95 353.6 311 58.8
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.8e-93 346.7 435 45.3
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.7e-90 337.4 307 58.6
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 1.4e-89 334.3 453 42.8
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 5.1e-87 325.9 474 38.6
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.7e-82 310.8 196 73.0
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 4.4e-78 296.2 288 53.1
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 4.5e-75 286.2 312 47.8
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 1.4e-71 274.6 269 52.8
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 4.5e-67 259.6 190 64.7
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 5.9e-67 259.2 492 33.3
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 4.7e-64 249.6 243 60.5
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.8e-61 239.6 254 52.0
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 3.5e-51 206.8 196 55.6
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 8.8e-47 192.2 131 67.2
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 2.0e-38 164.5 279 34.8
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.5e-33 148.3 433 26.8
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-31 141.7 122 57.4
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 1.4e-28 131.7 80 70.0
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.7e-26 124.8 98 58.2
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 1.6e-24 118.2 83 63.9
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 1.4e-23 115.2 201 34.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 8.6e-18 95.9 128 46.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 4.3e-17 93.6 67 62.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 6.2e-16 89.7 63 63.5
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.4e-15 88.6 118 40.7
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 3.1e-15 87.4 63 61.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.7e-10 71.6 57 63.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 6.6e-10 69.7 176 29.5
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.5e-09 68.6 46 63.0
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 6.9e-07 59.7 65 44.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 7.6e-06 56.2 113 32.7


User provided reference genes

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