Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 4.1e-87 324.7 164 100.0
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 2.0e-62 242.7 163 76.7
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 1.9e-60 236.1 170 72.9
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 1.2e-59 233.4 156 77.6
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 2.7e-59 232.3 153 75.2
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 4.7e-59 231.5 165 70.9
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 1.0e-58 230.3 169 69.8
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 1.5e-57 226.5 158 72.8
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 7.5e-57 224.2 173 71.1
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 2.8e-56 222.2 160 71.2
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 4.8e-56 221.5 162 71.6
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 8.3e-56 220.7 171 70.8
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 1.1e-55 220.3 171 67.8
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 2.4e-55 219.2 157 69.4
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 7.0e-55 217.6 166 69.3
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 1.6e-54 216.5 154 70.1
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.3e-53 213.4 156 71.8
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 2.9e-53 212.2 156 71.2
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 5.0e-53 211.5 157 67.5
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 5.0e-53 211.5 159 68.6
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 6.5e-53 211.1 156 67.3
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 1.5e-52 209.9 155 67.1
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 1.5e-52 209.9 202 60.4
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 1.9e-52 209.5 154 64.9
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 4.2e-52 208.4 168 66.7
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 5.5e-52 208.0 157 65.6
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 9.5e-52 207.2 172 65.7
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 2.8e-51 205.7 157 65.6
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 2.8e-51 205.7 156 72.4
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 3.6e-51 205.3 155 66.5
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 3.6e-51 205.3 153 66.7
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 3.6e-51 205.3 173 64.7
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 4.7e-51 204.9 174 64.4
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 1.4e-50 203.4 155 66.5
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 1.8e-50 203.0 172 62.2
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 2.3e-50 202.6 170 63.5
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 2.3e-50 202.6 161 65.8
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 4.0e-50 201.8 156 65.4
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.0e-49 199.5 153 63.4
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.0e-49 199.5 153 66.7
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 2.6e-49 199.1 164 62.2
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 7.5e-49 197.6 158 65.2
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 9.8e-49 197.2 173 61.8
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 2.8e-48 195.7 154 64.9
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 2.8e-48 195.7 157 65.6
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 3.7e-48 195.3 156 63.5
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 4.1e-47 191.8 154 66.9
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 1.6e-46 189.9 189 57.1
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 3.5e-46 188.7 161 60.9
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 3.5e-46 188.7 162 59.9
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 4.5e-46 188.3 150 63.3
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 1.0e-42 177.2 154 60.4
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 3.0e-42 175.6 151 59.6
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 6.8e-42 174.5 160 58.1
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 3.4e-41 172.2 163 57.1
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 3.4e-41 172.2 161 53.4
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 1.4e-39 166.8 164 53.7
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 2.4e-39 166.0 156 55.8
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 2.7e-38 162.5 157 57.3
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 3.5e-38 162.2 165 50.9
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 3.0e-37 159.1 153 56.2
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 3.9e-37 158.7 161 52.2
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 5.0e-37 158.3 123 62.6
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 1.9e-36 156.4 145 53.8
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 9.5e-36 154.1 164 51.2
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 1.6e-35 153.3 143 52.4
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 2.8e-35 152.5 153 52.9
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 3.6e-35 152.1 149 55.7
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 4.7e-35 151.8 163 50.9
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 6.2e-35 151.4 147 52.4
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 8.0e-35 151.0 152 52.0
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 1.1e-34 150.6 156 51.3
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 1.1e-34 150.6 156 51.3
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 1.4e-34 150.2 155 51.6
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 1.4e-34 150.2 154 51.3
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.3e-34 149.4 153 51.6
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 2.3e-34 149.4 161 51.6
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 3.1e-34 149.1 160 50.6
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 5.2e-34 148.3 155 51.0
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 5.2e-34 148.3 155 51.0
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 5.2e-34 148.3 156 52.6
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 1.2e-33 147.1 153 50.3
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 3.4e-33 145.6 169 48.5
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 7.5e-33 144.4 116 64.7
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 1.3e-32 143.7 99 70.7
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 2.9e-32 142.5 136 54.4
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 7.0e-31 137.9 149 48.3
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 7.0e-31 137.9 149 48.3
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 1.2e-30 137.1 150 48.0
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.6e-30 136.7 138 52.2
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 1.6e-30 136.7 156 49.4
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 1.6e-27 126.7 152 45.4
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 2.9e-24 115.9 122 54.9
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 1.5e-20 103.6 107 53.3
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 9.5e-20 100.9 91 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 1.1e-18 97.4 131 40.5
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 5.2e-18 95.1 79 62.0
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.0e-17 93.2 80 61.2
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 4.4e-17 92.0 106 48.1
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 2.1e-14 83.2 97 43.3
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 1.0e-13 80.9 45 86.7
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 3.8e-08 62.4 53 50.9
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 5.4e-07 58.5 36 72.2


User provided reference genes

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