Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.3e-111 405.6 207 100.0
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 4.7e-80 301.6 200 80.0
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.2e-73 278.9 205 73.7
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 3.2e-73 278.9 205 73.7
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.2e-72 276.9 207 72.0
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.8e-68 263.1 205 69.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.6e-67 260.0 199 68.3
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.6e-67 259.2 201 69.2
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 3.5e-67 258.8 208 68.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.7e-66 256.5 205 66.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 8.5e-66 254.2 197 67.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 1.1e-65 253.8 198 69.7
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 2.5e-65 252.7 199 65.8
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.6e-64 248.8 206 68.0
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 4.7e-64 248.4 217 65.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 6.1e-64 248.1 212 63.7
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.4e-63 246.9 213 64.3
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 2.3e-63 246.1 215 64.2
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.0e-63 245.7 218 66.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.0e-63 245.4 209 63.6
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.0e-63 245.4 209 64.1
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.0e-63 245.4 209 63.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 6.7e-63 244.6 205 68.8
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 8.8e-63 244.2 203 63.1
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 1.2e-62 243.8 210 65.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-62 243.8 206 65.5
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 1.5e-62 243.4 211 65.9
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.0e-62 243.0 208 65.9
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-62 242.3 209 64.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 9.7e-62 240.7 211 62.6
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-61 238.4 201 67.7
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.3e-61 238.0 208 65.9
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 8.2e-61 237.7 204 65.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.8e-60 236.5 204 67.6
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.8e-60 236.5 204 67.6
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.1e-60 235.7 214 61.2
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 5.3e-60 235.0 217 61.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.0e-60 234.6 196 65.3
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-59 233.8 215 65.1
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-59 233.8 203 67.0
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-59 233.8 208 63.9
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.6e-59 233.4 209 60.3
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 2.0e-59 233.0 199 61.8
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-59 233.0 214 61.7
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 2.0e-59 233.0 217 62.7
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 2.7e-59 232.6 213 64.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 5.9e-59 231.5 205 63.4
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 5.9e-59 231.5 190 68.4
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.7e-59 231.1 209 61.7
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.0e-58 230.7 212 59.9
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.0e-58 230.7 208 63.0
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.0e-58 230.7 207 63.3
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.3e-58 230.3 202 62.9
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.7e-58 229.9 230 57.0
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.2e-58 229.6 201 63.2
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 5.0e-58 228.4 201 63.7
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.1e-57 227.3 210 61.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.9e-57 226.5 210 60.0
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.5e-57 226.1 198 60.1
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.2e-57 225.7 210 62.4
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.5e-57 224.9 208 62.0
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 9.4e-57 224.2 205 60.5
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 9.4e-57 224.2 216 58.8
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 2.1e-56 223.0 197 60.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 2.7e-56 222.6 206 59.7
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.6e-56 222.2 185 66.5
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 3.6e-56 222.2 200 59.5
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 8.0e-56 221.1 199 58.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.4e-55 220.3 210 57.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.8e-55 219.9 204 59.3
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.8e-55 219.9 201 59.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.8e-55 219.9 218 56.4
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.8e-55 219.9 214 57.9
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.3e-55 219.5 204 58.8
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.3e-55 219.5 210 61.4
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.3e-55 219.5 194 61.9
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 2.3e-55 219.5 199 59.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 3.0e-55 219.2 198 60.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 8.8e-55 217.6 209 59.8
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 8.8e-55 217.6 198 58.6
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.5e-54 216.9 201 59.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.0e-54 216.5 218 57.8
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.6e-54 216.1 197 59.4
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.7e-53 213.4 198 59.6
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.2e-53 213.0 190 57.9
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 4.8e-53 211.8 162 67.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.8e-53 211.8 203 62.6
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-53 211.8 198 60.1
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 8.3e-53 211.1 198 60.6
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 8.3e-53 211.1 198 60.6
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 8.3e-53 211.1 159 69.8
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.4e-52 210.3 209 59.8
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.8e-52 209.9 195 59.0
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 3.1e-52 209.1 199 57.8
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 5.4e-52 208.4 208 55.8
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 7.0e-52 208.0 204 55.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 9.1e-52 207.6 199 57.8
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 9.1e-52 207.6 198 57.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.2e-51 207.2 203 56.2
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 4.5e-51 205.3 233 52.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.9e-51 204.9 204 55.4
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 5.9e-51 204.9 204 55.4
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 2.9e-50 202.6 216 53.7
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 8.6e-50 201.1 160 65.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.9e-49 199.9 198 55.6
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 4.0e-47 192.2 207 51.7
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.5e-46 190.3 155 63.9
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 2.0e-46 189.9 206 51.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.6e-46 189.5 204 51.5
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.2e-45 186.4 187 55.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.8e-45 186.0 205 50.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 1.6e-43 180.3 153 65.4
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.3e-42 176.4 216 45.8
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.8e-42 175.6 186 54.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.1e-40 169.9 191 51.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.2e-38 164.1 142 62.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.0e-38 163.3 213 46.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.7e-37 160.2 138 62.3
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 8.3e-37 157.9 179 50.3
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.1e-36 157.5 210 45.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 9.2e-36 154.5 182 50.0
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 1.6e-35 153.7 220 41.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.7e-35 152.9 183 44.3
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.7e-35 152.9 190 47.4
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.7e-34 150.2 146 55.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 8.6e-34 147.9 220 42.7
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.1e-33 147.5 220 40.5
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.5e-33 146.4 128 58.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 8.0e-32 141.4 189 41.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 1.4e-31 140.6 205 46.3
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 6.8e-31 138.3 111 63.1
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.5e-30 137.1 151 48.3
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.5e-30 137.1 187 43.3
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.3e-29 134.0 206 42.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 9.2e-28 127.9 135 47.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.0e-26 122.9 101 53.5
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.1e-26 122.1 126 58.7
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.3e-25 119.0 126 57.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 5.6e-25 118.6 94 60.6
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 4.7e-24 115.5 187 40.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 8.9e-23 111.3 202 36.6
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.0e-22 110.2 89 56.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 3.4e-22 109.4 116 57.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 5.8e-22 108.6 93 50.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 3.7e-21 105.9 129 41.9
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 8.3e-21 104.8 84 51.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 4.1e-20 102.4 113 58.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 7.8e-19 98.2 92 51.1
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 5.1e-18 95.5 87 48.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.6e-18 95.1 132 39.4
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 8.6e-18 94.7 127 39.4
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.1e-16 90.1 159 40.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 6.8e-15 85.1 184 37.0
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-14 83.2 100 50.0
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.1e-12 77.8 113 43.4
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 2.1e-08 63.5 65 50.8
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 2.4e-07 60.1 68 47.1


User provided reference genes

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