Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 2.4e-136 489.2 320 100.0
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 1.7e-84 317.0 242 96.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 2.0e-45 187.2 355 37.7
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 4.6e-42 176.0 347 39.5
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.9e-42 175.6 319 37.3
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.7e-41 174.1 325 41.2
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.9e-41 172.9 327 41.3
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.3e-40 169.9 341 38.1
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.6e-39 167.5 327 43.4
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.6e-39 166.4 340 37.4
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 4.7e-39 166.0 318 39.3
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.0e-39 165.2 340 36.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-35 154.5 366 34.4
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.9e-35 154.1 332 36.4
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 3.5e-34 149.8 333 37.5
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 3.5e-34 149.8 324 35.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.6e-34 149.4 344 35.2
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.7e-33 147.5 321 35.5
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.3e-33 147.1 321 35.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.5e-32 143.7 331 35.3
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 3.3e-32 143.3 340 34.4
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 9.5e-32 141.7 323 35.0
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 9.5e-32 141.7 321 35.5
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.6e-31 141.0 143 62.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.6e-31 141.0 363 33.3
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.8e-31 140.2 329 37.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.2e-31 139.0 335 32.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.1e-30 138.3 387 31.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.3e-30 137.1 326 33.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 3.1e-30 136.7 341 33.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.0e-30 136.3 318 38.4
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 4.0e-30 136.3 347 34.6
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.4e-29 133.3 345 33.0
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 4.4e-29 132.9 330 40.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 5.8e-29 132.5 330 36.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.9e-29 131.7 330 31.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.7e-28 129.8 322 40.1
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.4e-27 127.1 325 32.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.1e-27 126.3 332 32.8
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.1e-27 126.3 103 63.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.1e-27 125.6 332 32.5
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.8e-26 122.1 319 32.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 7.8e-26 122.1 333 32.4
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 1.7e-25 120.9 327 35.5
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.9e-25 119.8 331 32.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 1.1e-24 118.2 327 36.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.5e-24 117.9 322 33.5
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.9e-24 117.5 103 62.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 2.5e-24 117.1 353 29.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.3e-24 116.7 334 31.1
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.3e-24 116.7 331 31.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 4.3e-24 116.3 320 39.4
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 4.3e-24 116.3 320 39.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 9.5e-24 115.2 259 38.2
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.2e-23 114.8 353 30.9
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.1e-23 114.0 326 30.4
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 6.2e-23 112.5 319 30.7
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.1e-22 111.7 331 33.5
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.4e-22 111.3 259 35.5
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.4e-22 110.5 320 37.8
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.4e-22 110.5 320 37.8
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.1e-22 110.2 321 28.7
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 5.2e-22 109.4 320 31.2
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 2.0e-21 107.5 338 30.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.0e-21 107.5 320 46.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.4e-21 106.7 320 31.9
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 4.4e-21 106.3 101 57.4
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 7.6e-21 105.5 380 28.4
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.7e-20 104.4 329 34.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.9e-20 103.6 325 30.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.8e-20 103.2 326 31.0
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 6.4e-20 102.4 323 34.4
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 6.4e-20 102.4 326 31.0
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 8.4e-20 102.1 320 30.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.1e-19 101.7 103 55.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 1.4e-19 101.3 318 33.3
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.4e-19 101.3 327 33.3
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.4e-19 101.3 354 28.2
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.2e-19 100.1 322 30.1
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.1e-19 99.0 326 39.3
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.2e-18 98.2 371 29.4
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-18 98.2 359 28.4
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.6e-18 97.8 328 34.8
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 2.1e-18 97.4 324 31.8
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.1e-18 97.4 324 30.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 2.7e-18 97.1 320 42.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 2.7e-18 97.1 323 28.8
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 2.7e-18 97.1 322 36.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.6e-18 96.3 333 25.8
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.7e-17 94.4 359 28.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 1.7e-17 94.4 353 27.8
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.6e-17 92.4 402 27.1
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 6.6e-17 92.4 330 30.0
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 8.7e-17 92.0 325 32.6
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 8.7e-17 92.0 323 28.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-16 91.7 328 26.5
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.5e-16 91.3 329 31.6
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 1.5e-16 91.3 317 29.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.6e-16 89.4 83 54.2
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 5.6e-16 89.4 79 58.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 7.3e-16 89.0 257 30.0
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.2e-15 88.2 341 33.1
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.2e-15 88.2 387 34.6
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 1.6e-15 87.8 408 27.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.6e-15 86.7 318 30.2
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.6e-15 86.7 391 36.3
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 4.7e-15 86.3 327 31.8
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 6.2e-15 85.9 78 53.8
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.1e-14 85.1 347 31.1
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.4e-14 84.0 319 27.9
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 4.0e-14 83.2 316 32.0
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 5.2e-14 82.8 103 50.5
Lj3C53G2 Lonicera japonica HOM05D004112 ORTHO05D004739 1.2e-13 81.6 72 55.6
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 1.5e-13 81.3 351 30.2
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.4e-13 80.1 333 29.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 1.3e-12 78.2 316 29.1
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.7e-12 77.8 104 43.3
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.7e-12 77.8 297 26.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.7e-12 77.8 339 27.7
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 2.9e-12 77.0 98 45.9
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 1.1e-11 75.1 323 29.4
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.4e-11 72.8 329 30.7
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 9.3e-11 72.0 125 39.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.2e-10 71.6 279 33.0
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 2.7e-10 70.5 392 26.3
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.5e-10 70.1 103 44.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.0e-10 69.3 404 27.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 7.8e-10 68.9 345 26.7
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.0e-09 67.0 348 29.3
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 5.1e-09 66.2 392 31.6
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.5e-08 64.7 218 35.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.5e-08 64.7 115 42.6
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 7.3e-08 62.4 328 28.4
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.1e-07 60.8 99 42.4
Lj3A1060T72 Lonicera japonica HOM05D004112 ORTHO05D004739 4.8e-07 59.7 55 58.2
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 4.0e-06 56.6 108 36.1
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 5.3e-06 56.2 94 41.5
BolC5t30033H Brassica oleracea HOM05D000639 ORTHO05D032511 5.3e-06 56.2 94 41.5
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 6.9e-06 55.8 320 24.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 9.0e-06 55.5 69 43.5


User provided reference genes

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