Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.2e-208 728.8 381 100.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.9e-160 568.9 371 78.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.2e-159 563.9 373 79.6
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-156 556.2 374 76.5
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.9e-156 556.2 370 78.1
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 2.8e-155 552.4 371 77.4
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.6e-155 552.0 371 77.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 8.1e-155 550.8 370 77.3
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 4.0e-154 548.5 372 76.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 6.9e-154 547.7 372 78.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 9.0e-154 547.4 371 77.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 9.0e-154 547.4 371 75.7
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.6e-153 545.8 372 78.0
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 7.6e-153 544.3 371 75.2
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.9e-152 541.6 371 75.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.4e-152 541.2 375 75.2
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.4e-151 540.0 371 75.7
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.9e-151 539.7 372 75.3
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.4e-151 539.3 368 74.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 5.4e-151 538.1 387 73.6
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 9.3e-151 537.3 375 75.7
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.1e-150 536.2 374 75.9
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.0e-149 533.9 354 78.0
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.3e-149 532.7 374 74.3
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 3.9e-149 531.9 374 74.6
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 5.1e-149 531.6 371 73.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.6e-149 531.2 370 73.8
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 8.7e-149 530.8 370 75.1
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.5e-148 530.0 369 74.8
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 7.3e-148 527.7 372 73.4
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.3e-147 526.9 368 73.4
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.6e-147 526.6 369 73.2
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 3.6e-147 525.4 371 73.6
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 6.2e-147 524.6 370 73.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.4e-146 523.5 370 73.2
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 2.4e-146 522.7 372 72.8
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.2e-145 520.4 372 72.8
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 3.4e-145 518.8 372 72.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 4.5e-145 518.5 371 71.7
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 9.9e-145 517.3 370 71.1
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 3.8e-144 515.4 322 90.1
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.1e-142 509.6 370 71.6
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 2.7e-142 509.2 373 71.0
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 4.6e-142 508.4 371 70.6
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-141 506.1 371 73.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 8.7e-141 504.2 372 72.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 8.7e-141 504.2 370 70.8
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.5e-140 503.4 380 70.8
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 3.3e-140 502.3 369 68.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 9.6e-140 500.7 319 81.5
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-139 500.4 371 70.6
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.6e-139 500.0 376 72.1
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.8e-139 499.2 374 70.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.7e-139 498.8 371 69.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.7e-139 498.8 371 70.4
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.8e-138 496.5 373 70.5
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.0e-138 495.4 457 61.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 4.0e-138 495.4 375 70.1
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.2e-137 493.8 393 67.4
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.0e-137 493.0 373 70.8
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 2.0e-137 493.0 371 68.7
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.6e-137 492.7 371 69.3
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.4e-137 492.3 371 69.0
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 7.6e-137 491.1 375 69.6
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.3e-136 490.3 370 70.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.2e-136 489.6 354 71.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 3.8e-136 488.8 370 66.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 6.4e-136 488.0 374 69.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.9e-135 486.5 373 69.4
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 7.1e-135 484.6 375 68.8
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.1e-134 483.0 370 67.3
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.7e-134 482.6 375 69.3
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 2.7e-134 482.6 375 69.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 3.5e-134 482.3 372 69.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.5e-134 482.3 372 69.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 4.6e-134 481.9 375 69.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-133 479.6 370 68.4
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.0e-133 479.2 372 66.9
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 3.9e-133 478.8 374 68.4
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 5.1e-133 478.4 376 68.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.1e-132 477.2 376 67.0
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.9e-132 476.5 374 66.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.3e-132 475.7 373 67.0
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 9.6e-132 474.2 369 67.5
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 9.6e-132 474.2 370 66.8
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.3e-131 473.8 372 68.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 4.8e-131 471.9 377 66.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 8.2e-131 471.1 375 68.0
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 8.2e-131 471.1 377 66.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.4e-130 470.3 370 66.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 5.3e-130 468.4 369 65.9
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.0e-129 466.5 356 68.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.6e-129 466.1 382 64.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.6e-129 466.1 355 69.0
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-128 464.2 369 65.3
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 4.9e-128 461.8 376 64.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.4e-127 460.3 374 66.6
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.9e-127 459.9 373 67.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 5.5e-127 458.4 371 65.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 5.5e-127 458.4 376 64.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-126 457.2 376 65.2
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.2e-126 457.2 415 63.4
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.1e-126 456.4 375 64.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 6.0e-126 454.9 376 63.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 8.2e-123 444.5 376 63.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.4e-122 443.0 358 65.1
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.7e-121 438.0 385 64.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-120 437.6 370 63.0
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.3e-120 437.2 374 63.4
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 8.5e-120 434.5 377 61.5
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-119 434.1 353 65.2
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.2e-118 430.6 369 63.7
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 4.6e-118 428.7 371 60.4
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.5e-116 423.7 376 61.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 8.2e-115 417.9 349 64.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.1e-114 416.0 372 62.4
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.0e-113 413.3 373 60.3
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.9e-111 406.8 368 60.3
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.6e-108 396.4 293 68.6
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.2e-105 387.5 373 58.2
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.6e-105 386.3 454 51.5
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.6e-105 386.3 380 58.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 9.4e-103 377.9 300 66.7
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.8e-101 373.6 254 77.6
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 4.2e-95 352.4 369 55.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.3e-93 346.7 278 64.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 9.1e-90 334.7 370 55.1
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.1e-87 327.8 290 61.4
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 5.0e-80 302.4 356 46.9
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 3.3e-79 299.7 356 46.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.2e-77 292.4 178 82.6
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.9e-72 276.6 185 73.0
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.2e-66 256.5 375 45.3
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.2e-65 254.6 177 75.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.5e-63 246.9 193 69.4
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.4e-58 230.3 178 64.6
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.2e-54 215.7 172 64.5
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.7e-48 197.6 143 72.7
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 9.3e-42 175.3 139 60.4
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.3e-39 166.4 133 66.9
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 7.1e-34 149.1 120 65.8
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.9e-33 145.6 103 69.9
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 5.6e-31 139.4 112 67.9
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.6e-30 137.9 204 45.1
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-26 125.2 95 67.4
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 7.1e-26 122.5 88 70.5
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.1e-24 116.3 97 60.8
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.8e-22 110.5 80 75.0
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.6e-17 94.7 324 28.7
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 4.1e-13 80.1 272 26.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.6e-12 75.9 89 49.4
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 3.5e-09 67.0 390 25.1
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 7.9e-09 65.9 51 66.7
Lsat_1_v5_gn_2_4320 Lactuca sativa HOM05D001886 ORTHO05D005666 6.7e-08 62.8 58 56.9
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.5e-07 61.6 44 70.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 1.6e-06 58.2 203 27.6


User provided reference genes

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