Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 3.3e-167 591.7 301 100.0
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 7.4e-119 431.0 310 75.8
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 9.7e-111 404.1 303 72.3
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 1.7e-110 403.3 306 71.6
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 2.4e-109 399.4 312 73.4
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 2.7e-105 386.0 305 69.5
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 1.5e-103 380.2 304 72.0
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 1.7e-102 376.7 311 67.5
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 1.7e-99 366.7 306 68.3
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 2.2e-99 366.3 307 68.1
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 1.1e-98 364.0 310 68.1
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.4e-98 363.6 301 68.1
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 3.2e-98 362.5 299 69.6
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.6e-97 360.1 296 66.2
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 2.1e-97 359.8 305 66.9
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 1.1e-95 354.0 297 66.3
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 1.5e-95 353.6 305 64.3
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.4e-93 347.1 311 65.0
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 1.8e-93 346.7 312 65.7
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 7.0e-93 344.7 311 65.0
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 1.2e-92 344.0 310 63.5
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 1.6e-92 343.6 310 64.2
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 7.7e-92 341.3 307 63.8
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 1.0e-91 340.9 311 64.6
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 1.3e-91 340.5 307 64.2
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 1.7e-91 340.1 313 60.4
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 5.0e-91 338.6 303 63.7
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.9e-90 336.7 308 62.0
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 1.9e-90 336.7 307 64.2
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 3.2e-90 335.9 299 64.2
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 5.5e-90 335.1 339 60.5
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 1.0e-88 330.9 298 61.7
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 1.0e-88 330.9 303 63.7
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 1.0e-88 330.9 301 62.8
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 1.8e-88 330.1 337 59.9
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 1.8e-88 330.1 309 58.9
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 2.3e-88 329.7 302 60.9
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 6.7e-88 328.2 297 62.0
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 8.8e-88 327.8 302 60.9
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 1.5e-87 327.0 302 60.9
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.6e-87 326.2 302 60.6
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 3.3e-87 325.9 295 64.4
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 3.3e-87 325.9 303 62.4
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 3.7e-86 322.4 268 64.6
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 8.2e-86 321.2 301 60.5
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 8.2e-86 321.2 302 62.6
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.1e-85 320.9 307 59.3
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 1.4e-85 320.5 299 61.9
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 3.5e-84 315.8 307 58.3
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 5.9e-84 315.1 291 62.9
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.9e-84 315.1 302 59.3
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.9e-84 315.1 302 59.3
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 5.9e-84 315.1 301 59.8
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.3e-83 313.9 317 60.3
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 5.0e-83 312.0 293 64.2
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 6.5e-83 311.6 320 57.2
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 1.1e-82 310.8 300 57.7
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 2.5e-82 309.7 310 60.0
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.2e-82 308.9 303 57.8
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 5.5e-82 308.5 317 56.2
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 7.2e-82 308.1 302 62.9
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 3.6e-81 305.8 301 61.8
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 1.2e-79 300.8 311 56.6
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 1.5e-79 300.4 293 58.7
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.0e-79 300.1 300 57.7
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 2.0e-79 300.1 294 60.9
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 1.3e-78 297.4 298 57.4
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 3.7e-78 295.8 307 55.4
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 3.7e-78 295.8 300 56.0
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 1.1e-77 294.3 292 58.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-77 294.3 288 59.7
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 3.5e-76 289.3 286 59.4
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 4.5e-76 288.9 292 56.5
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.3e-75 287.3 304 55.3
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 2.3e-75 286.6 302 55.6
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 5.0e-75 285.4 289 58.5
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 6.6e-75 285.0 305 55.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 1.6e-73 280.4 345 50.1
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 3.0e-72 276.2 352 48.3
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 3.0e-72 276.2 285 58.6
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 4.0e-72 275.8 296 55.7
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 6.8e-72 275.0 303 54.5
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 2.0e-71 273.5 325 53.5
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 3.1e-69 266.2 363 47.4
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 5.9e-68 261.9 394 43.7
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 7.3e-66 255.0 289 51.6
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 2.1e-65 253.4 211 68.2
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 1.2e-60 237.7 131 87.0
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 2.5e-58 229.9 250 57.2
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 5.6e-58 228.8 301 52.5
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.7e-54 216.1 110 88.2
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 1.1e-53 214.5 286 46.5
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 3.5e-52 209.5 111 88.3
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 7.8e-52 208.4 110 87.3
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 7.8e-52 208.4 283 46.3
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.7e-46 190.7 292 43.2
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 4.9e-46 189.1 99 86.9
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.7e-44 183.3 99 86.9
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 2.7e-44 183.3 99 85.9
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 3.5e-44 183.0 136 62.5
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 8.6e-43 178.3 94 87.2
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 2.5e-42 176.8 132 73.5
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 2.2e-38 163.7 124 60.5
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 7.1e-37 158.7 98 78.6
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 3.5e-36 156.4 248 46.4
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 6.6e-35 152.1 99 70.7
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 1.9e-34 150.6 210 50.5
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 1.1e-32 144.8 208 47.1
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.5e-31 141.0 196 52.0
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 2.5e-26 123.6 204 46.1
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 8.7e-19 98.6 190 41.6
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-17 94.7 106 57.5
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-17 94.7 106 57.5
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 2.8e-17 93.6 106 58.5
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 2.8e-17 93.6 106 56.6
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 8.1e-17 92.0 188 44.1
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 2.4e-16 90.5 124 46.8
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 7.6e-15 85.5 191 37.2
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 9.9e-15 85.1 82 57.3
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 8.4e-14 82.0 113 45.1
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 1.9e-13 80.9 41 90.2
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 3.0e-11 73.6 110 43.6
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 2.1e-09 67.4 44 68.2
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 1.4e-08 64.7 107 41.1


User provided reference genes

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