Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 2.2e-58 228.8 119 100.0
Lj2A946T24 Lonicera japonica HOM05D006639 ORTHO05D008339 3.0e-47 191.8 102 99.0
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 2.9e-34 148.7 101 78.2
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 3.8e-34 148.3 101 76.2
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 3.2e-33 145.2 101 77.2
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 5.5e-33 144.4 99 75.8
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 9.3e-33 143.7 100 76.0
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 1.2e-32 143.3 97 77.3
SGA_v2.0_scaffold22G09859 Striga asiatica HOM05D006639 ORTHO05D008339 1.2e-32 143.3 103 72.8
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 3.5e-32 141.7 101 75.2
PGSC0003DMG400026357 Solanum tuberosum HOM05D006639 ORTHO05D008339 7.9e-32 140.6 106 71.7
Peaxi162Scf00040g00018 Petunia axillaris HOM05D006639 ORTHO05D008339 1.3e-31 139.8 105 67.6
Solyc11g068480.2 Solanum lycopersicum HOM05D006639 ORTHO05D008339 1.3e-31 139.8 98 73.5
Sopen11g027190 Solanum pennellii HOM05D006639 ORTHO05D008339 1.3e-31 139.8 98 73.5
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 2.3e-31 139.0 106 70.8
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 2.3e-31 139.0 106 71.7
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 3.0e-31 138.7 101 71.3
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 3.9e-31 138.3 98 74.5
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 6.7e-31 137.5 98 74.5
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 8.7e-31 137.1 98 71.4
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.5e-30 136.3 99 71.7
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 1.9e-30 136.0 99 72.7
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 2.5e-30 135.6 106 68.9
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.5e-30 135.6 99 70.7
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 4.3e-30 134.8 99 71.7
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 4.3e-30 134.8 98 72.4
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 1.3e-29 133.3 102 69.6
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 1.6e-29 132.9 95 72.6
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.6e-29 132.9 98 71.4
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 1.6e-29 132.9 100 70.0
HPP92_003216 Vanilla planifolia HOM05D006639 ORTHO05D008339 1.6e-29 132.9 108 63.0
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 2.8e-29 132.1 98 72.4
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 2.8e-29 132.1 104 68.3
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 4.8e-29 131.3 99 71.7
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 4.8e-29 131.3 105 66.7
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 4.8e-29 131.3 98 69.4
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 4.8e-29 131.3 98 69.4
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 6.2e-29 131.0 96 70.8
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 6.2e-29 131.0 98 72.4
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 1.1e-28 130.2 94 72.3
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 2.4e-28 129.0 96 71.9
ATR0776G083 Amborella trichopoda HOM05D006639 ORTHO05D008339 3.1e-28 128.6 96 66.7
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 4.1e-28 128.3 99 68.7
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 4.1e-28 128.3 102 70.6
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 4.1e-28 128.3 97 69.1
unitig_37.g12892 Utricularia gibba HOM05D006639 ORTHO05D008339 4.1e-28 128.3 103 66.0
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 4.1e-28 128.3 101 65.3
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 5.3e-28 127.9 103 68.0
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 5.3e-28 127.9 103 67.0
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 5.3e-28 127.9 94 71.3
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 5.3e-28 127.9 102 66.7
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 6.9e-28 127.5 98 70.4
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 9.0e-28 127.1 100 67.0
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 9.0e-28 127.1 99 66.7
DCAR_010346 Daucus carota HOM05D006639 ORTHO05D008339 9.0e-28 127.1 103 68.0
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 9.0e-28 127.1 102 66.7
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 9.0e-28 127.1 94 71.3
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 9.0e-28 127.1 98 67.3
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 4.5e-27 124.8 98 69.4
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 4.5e-27 124.8 96 66.7
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 4.5e-27 124.8 96 68.8
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 5.8e-27 124.4 100 66.0
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 7.6e-27 124.0 100 66.0
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 1.3e-26 123.2 101 63.4
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 1.3e-26 123.2 96 68.8
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 1.3e-26 123.2 96 68.8
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 1.7e-26 122.9 98 65.3
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 1.7e-26 122.9 98 65.3
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 2.2e-26 122.5 100 65.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 2.2e-26 122.5 94 63.8
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.2e-26 122.5 96 69.8
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 2.2e-26 122.5 98 65.3
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 2.2e-26 122.5 93 68.8
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 5.0e-26 121.3 96 67.7
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 6.5e-26 120.9 94 64.9
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 8.4e-26 120.6 101 64.4
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 1.1e-25 120.2 101 64.4
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 1.4e-25 119.8 93 68.8
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 1.9e-25 119.4 94 68.1
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 1.9e-25 119.4 101 61.4
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 2.5e-25 119.0 100 65.0
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 2.5e-25 119.0 100 64.0
DCAR_006164 Daucus carota HOM05D006639 ORTHO05D008339 2.5e-25 119.0 104 67.3
SMO340G0007 Selaginella moellendorffii HOM05D006639 ORTHO05D008339 2.5e-25 119.0 96 62.5
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 3.2e-25 118.6 100 63.0
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 4.2e-25 118.2 100 64.0
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 4.2e-25 118.2 94 62.8
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 5.5e-25 117.9 100 63.0
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 5.5e-25 117.9 100 63.0
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 5.5e-25 117.9 100 63.0
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 5.5e-25 117.9 100 63.0
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 7.2e-25 117.5 89 67.4
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 1.6e-24 116.3 89 68.5
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 6.1e-24 114.4 100 62.0
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 7.9e-24 114.0 100 62.0
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 1.0e-23 113.6 100 62.0
Mapoly0105s0006 Marchantia polymorpha HOM05D006639 ORTHO05D008339 1.0e-23 113.6 97 59.8
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 1.0e-23 113.6 98 65.3
SEGI_32267 Sequoiadendron giganteum HOM05D006639 ORTHO05D008339 1.3e-23 113.2 90 58.9
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 1.8e-23 112.8 100 62.0
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 5.1e-23 111.3 101 59.4
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 5.1e-23 111.3 104 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1778 Anthoceros agrestis HOM05D006639 ORTHO05D008339 8.7e-23 110.5 98 58.2
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 9.7e-22 107.1 101 56.4
Pp3c26_8280 Physcomitrium patens HOM05D006639 ORTHO05D008339 2.8e-21 105.5 90 56.7
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 8.2e-21 104.0 101 55.4
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 1.1e-20 103.6 101 55.4
PRCOL_00006285 Prasinoderma coloniale HOM05D006639 ORTHO05D008339 1.6e-16 89.7 91 47.3
MCO15G204 Micromonas commoda HOM05D006639 ORTHO05D008339 4.6e-16 88.2 97 46.4
Cre07.g341800 Chlamydomonas reinhardtii HOM05D006639 ORTHO05D008339 1.4e-15 86.7 91 45.1
ECA238G0189 Erigeron canadensis HOM05D006639 ORTHO05D008339 3.9e-15 85.1 49 83.7
Lsat_1_v5_gn_6_29620 Lactuca sativa HOM05D000297 ORTHO05D000193 2.3e-07 59.3 98 33.7
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 8.8e-07 57.4 61 52.5
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.5e-06 56.6 102 39.2
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.5e-06 56.6 102 39.2
AUR62009752 Chenopodium quinoa HOM05D006639 ORTHO05D008339 2.6e-06 55.8 38 63.2
Gohir.A10G163100 Gossypium hirsutum HOM05D000297 ORTHO05D000193 4.4e-06 55.1 97 35.1
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 7.4e-06 54.3 59 52.5
Duzib170G1080 Durio zibethinus HOM05D000297 ORTHO05D000193 9.7e-06 53.9 90 36.7
Nitab4.5_0001697g0090 Nicotiana tabacum HOM05D000297 ORTHO05D000193 9.7e-06 53.9 90 36.7
Potri.001G367500 Populus trichocarpa HOM05D000297 ORTHO05D000193 9.7e-06 53.9 90 36.7
PGR004G1997 Punica granatum HOM05D000297 ORTHO05D000193 9.7e-06 53.9 90 36.7


User provided reference genes

Program Settings