Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 4.9e-117 424.5 213 100.0
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-84 316.2 204 79.4
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 6.7e-82 307.8 204 77.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-81 306.6 204 77.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 9.6e-81 303.9 204 77.0
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.7e-77 293.1 204 72.1
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.2e-76 288.5 206 71.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.2e-72 276.2 204 70.6
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 4.1e-71 271.9 214 67.3
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.3e-71 271.6 205 68.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.5e-70 270.0 206 66.0
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.5e-70 268.5 211 66.8
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.0e-69 267.3 206 68.9
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.7e-69 266.5 211 66.8
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.1e-68 263.8 211 66.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.9e-68 263.1 197 69.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 3.2e-68 262.3 204 66.7
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 5.5e-68 261.5 203 67.5
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-67 260.4 256 58.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.6e-67 258.5 208 66.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.0e-66 257.3 206 66.5
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.8e-66 256.5 220 61.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.9e-66 255.4 206 65.0
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.8e-66 254.2 202 66.8
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 8.8e-66 254.2 222 60.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.5e-65 253.4 208 64.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.5e-65 253.4 208 64.4
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 3.3e-65 252.3 206 65.5
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 3.3e-65 252.3 206 65.5
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.3e-65 251.9 300 50.3
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.4e-65 251.1 202 65.8
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-64 250.0 210 62.9
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.7e-64 250.0 210 62.9
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.7e-64 250.0 210 62.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.7e-64 250.0 201 64.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.2e-64 247.7 209 67.5
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.1e-63 247.3 207 65.7
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 5.3e-63 245.0 205 62.9
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 9.1e-63 244.2 203 65.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.2e-62 243.8 203 64.5
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.2e-62 243.8 213 62.9
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.0e-61 240.7 202 63.4
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.0e-61 238.4 315 47.6
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-60 236.9 205 61.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.4e-60 236.9 202 64.4
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.9e-60 236.5 213 61.5
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 9.4e-60 234.2 202 61.4
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 9.4e-60 234.2 202 61.4
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.2e-59 233.8 213 60.6
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.1e-59 233.0 202 61.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.7e-59 232.6 205 62.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.0e-57 226.5 205 58.5
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 4.4e-57 225.3 205 61.0
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.7e-56 223.4 202 59.9
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.8e-56 222.6 201 59.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 3.7e-56 222.2 203 59.6
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.8e-56 221.9 201 59.7
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.1e-55 220.7 203 59.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 2.4e-55 219.5 201 59.2
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.1e-55 218.8 204 59.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.0e-54 216.5 206 55.8
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.5e-54 215.3 209 59.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.7e-53 213.4 206 60.7
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.5e-52 210.3 201 57.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.5e-52 208.4 204 58.3
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 5.5e-52 208.4 201 58.2
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 7.2e-52 208.0 207 56.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.4e-52 207.6 202 57.9
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-51 207.2 205 55.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.2e-51 207.2 218 60.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 2.1e-51 206.5 202 55.4
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.6e-51 205.7 214 56.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.1e-49 200.7 209 52.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 6.3e-48 194.9 206 55.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.2e-48 194.5 210 52.9
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.8e-47 193.4 217 53.5
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.4e-47 193.0 210 52.4
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-46 189.9 216 53.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.0e-46 189.9 216 53.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.5e-46 188.7 212 51.9
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.9e-46 188.3 194 54.1
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.0e-45 187.6 185 58.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.7e-45 186.8 210 50.5
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.2e-45 186.4 211 53.6
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 3.8e-45 185.7 211 53.6
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.8e-45 185.7 214 51.4
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 8.5e-45 184.5 205 51.7
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.5e-44 183.0 199 52.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.5e-44 183.0 166 60.2
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 4.2e-44 182.2 211 53.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 6.1e-43 178.3 210 44.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 6.8e-42 174.9 225 45.8
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.0e-41 173.3 212 48.1
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.6e-41 172.9 233 45.9
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.6e-41 172.9 201 51.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.4e-41 172.6 208 48.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.8e-40 169.5 217 49.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.8e-40 169.5 201 48.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.8e-40 168.7 219 45.7
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.4e-39 167.2 207 49.3
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.0e-37 161.0 205 44.9
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.9e-37 159.5 205 46.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.8e-37 159.1 241 44.4
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 5.0e-37 158.7 207 47.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 9.4e-36 154.5 165 55.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 9.4e-36 154.5 241 43.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 8.0e-35 151.4 222 47.3
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.0e-34 151.0 210 46.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.4e-34 150.6 211 47.9
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.8e-34 150.2 206 46.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-33 147.5 144 54.9
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.0e-33 146.7 89 79.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.6e-33 146.4 216 44.4
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 3.4e-33 146.0 182 47.3
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.5e-33 144.8 248 39.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 9.8e-33 144.4 203 48.3
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.7e-32 143.7 213 44.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.8e-32 142.9 197 45.7
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 3.7e-32 142.5 213 44.6
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 4.5e-30 135.6 192 43.2
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.0e-29 132.1 226 40.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.1e-28 131.0 219 41.6
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 3.3e-28 129.4 203 42.9
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 6.1e-27 125.2 83 74.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.0e-26 122.5 203 41.4
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.0e-25 120.2 214 41.6
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.3e-24 117.5 184 42.9
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.9e-24 115.5 205 38.5
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.1e-23 112.5 179 40.8
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.2e-22 110.9 212 34.4
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.5e-22 109.4 217 35.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.8e-22 108.2 212 36.3
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 2.3e-21 106.7 207 36.7
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.9e-20 103.6 196 38.3
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 7.3e-20 101.7 129 49.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.4e-18 97.4 83 59.0
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 3.1e-18 96.3 183 36.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.8e-18 95.1 211 36.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.9e-18 94.7 216 35.2
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 6.6e-13 78.6 56 69.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.3e-10 70.1 149 35.6
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 4.4e-09 65.9 69 46.4
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 6.0e-06 55.5 159 30.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.8e-06 55.1 36 72.2


User provided reference genes

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