Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.0e-106 390.2 210 100.0
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.4e-92 342.4 268 71.3
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 3.9e-58 228.8 236 58.1
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.7e-51 206.1 240 55.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.6e-51 205.3 240 54.6
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 6.6e-50 201.4 240 53.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.3e-48 197.2 238 52.9
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.8e-47 193.4 243 51.0
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.8e-47 193.4 241 53.1
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.1e-47 192.6 161 65.8
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.2e-46 190.7 241 51.5
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.0e-46 189.9 241 52.3
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.6e-46 189.5 240 52.1
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 2.6e-46 189.5 219 54.8
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 9.9e-46 187.6 238 52.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 9.9e-46 187.6 243 51.4
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 9.9e-46 187.6 244 50.4
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.7e-45 186.8 239 52.3
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.9e-45 186.0 244 50.4
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 2.9e-45 186.0 241 51.5
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.9e-45 185.3 240 51.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 6.4e-45 184.9 239 49.8
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 8.4e-45 184.5 240 50.8
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 8.4e-45 184.5 241 51.0
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.9e-44 183.3 207 55.1
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 9.3e-44 181.0 243 50.6
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 2.7e-43 179.5 268 47.4
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 3.5e-43 179.1 209 54.1
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 4.6e-43 178.7 242 49.2
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 6.0e-43 178.3 239 48.1
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 1.0e-42 177.6 242 49.2
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 1.0e-42 177.6 241 51.5
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 1.3e-42 177.2 258 47.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.3e-42 177.2 218 53.2
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.8e-42 176.8 242 48.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.8e-42 176.8 226 50.4
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.8e-42 176.8 240 51.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 5.1e-42 175.3 209 53.6
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.7e-42 174.9 247 49.0
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 8.7e-42 174.5 239 49.4
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.1e-41 174.1 222 52.3
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.5e-41 173.7 241 47.3
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 1.9e-41 173.3 240 48.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.9e-41 173.3 243 47.7
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 4.3e-41 172.2 242 48.8
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 2.1e-40 169.9 240 47.9
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.4e-39 167.2 210 50.5
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 2.4e-39 166.4 184 56.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 2.4e-39 166.4 220 50.0
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.4e-39 166.4 227 48.0
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.4e-39 166.4 211 53.1
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 3.1e-39 166.0 177 58.2
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-39 165.6 202 50.5
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 5.3e-39 165.2 253 46.2
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 9.0e-39 164.5 234 48.7
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 9.0e-39 164.5 231 46.8
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.2e-38 164.1 239 46.0
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.2e-38 164.1 219 48.4
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-38 163.7 202 50.0
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.5e-38 163.7 191 52.4
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.5e-38 163.7 240 47.9
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.6e-38 162.9 260 44.6
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 2.6e-38 162.9 291 40.9
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-38 162.5 202 49.5
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.4e-38 162.5 201 50.2
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.4e-38 162.5 244 44.7
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 4.5e-38 162.2 241 45.6
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 7.6e-38 161.4 202 54.5
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 7.6e-38 161.4 242 47.5
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 1.3e-37 160.6 240 46.7
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.7e-37 160.2 236 45.8
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.7e-37 160.2 236 45.8
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 4.9e-37 158.7 236 45.3
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.9e-37 158.7 204 48.5
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.9e-37 158.7 204 48.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 8.4e-37 157.9 229 47.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 1.1e-36 157.5 242 45.5
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 1.4e-36 157.1 234 45.7
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 1.4e-36 157.1 232 45.3
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.4e-36 157.1 261 43.7
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.5e-36 156.4 202 53.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.2e-36 155.6 244 42.6
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.2e-36 155.6 236 44.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 9.3e-36 154.5 243 45.3
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 2.7e-35 152.9 193 49.7
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 3.5e-35 152.5 235 43.8
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 7.9e-35 151.4 234 45.7
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.8e-34 150.2 235 43.4
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.8e-34 150.2 237 44.3
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 5.1e-34 148.7 174 52.9
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 8.7e-34 147.9 233 43.8
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 1.1e-33 147.5 222 45.5
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.9e-33 146.7 225 44.9
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 9.6e-33 144.4 228 41.2
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-32 144.1 192 47.4
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.6e-32 143.7 203 45.3
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 2.1e-32 143.3 236 44.1
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 4.8e-32 142.1 208 44.2
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.4e-31 140.6 231 41.6
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.8e-31 140.2 194 50.0
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 4.1e-31 139.0 240 45.0
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 1.2e-30 137.5 194 46.4
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.4e-30 136.0 216 44.4
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-29 134.0 202 46.0
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 1.3e-29 134.0 189 43.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.3e-29 134.0 231 39.8
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 8.4e-29 131.3 232 39.2
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 8.4e-29 131.3 229 45.9
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 1.1e-28 131.0 240 39.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 2.5e-28 129.8 230 41.7
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.2e-28 129.0 236 43.6
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 4.2e-28 129.0 232 38.8
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 9.3e-28 127.9 242 41.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 3.5e-27 125.9 240 37.1
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-26 124.4 171 46.8
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 3.9e-26 122.5 233 38.2
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 6.7e-26 121.7 242 37.6
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 5.7e-25 118.6 247 38.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 5.7e-25 118.6 243 42.0
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.4e-23 114.0 216 42.6
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.8e-23 113.6 235 40.0
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.1e-23 112.8 232 37.9
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 4.1e-23 112.5 180 48.9
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.6e-22 109.8 190 45.8
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 2.6e-22 109.8 165 45.5
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 4.5e-22 109.0 169 43.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 8.5e-21 104.8 220 38.2
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 8.5e-21 104.8 121 54.5
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.2e-20 102.8 221 38.0
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.6e-19 100.5 231 36.4
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-19 99.4 162 45.1
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 4.6e-19 99.0 217 35.9
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.3e-17 92.8 235 38.7
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 4.3e-17 92.4 203 35.5
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 5.3e-15 85.5 211 35.5
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 4.5e-14 82.4 175 36.0
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 4.5e-14 82.4 112 45.5
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 5.9e-14 82.0 98 55.1
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 5.9e-14 82.0 108 49.1
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 1.0e-13 81.3 161 40.4
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.9e-13 79.7 146 38.4
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-12 77.8 91 47.3
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 2.7e-11 73.2 91 46.2
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.4e-10 70.9 134 37.3
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-09 67.8 88 45.5
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-09 67.4 88 45.5
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-09 67.4 91 47.3
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.0e-09 67.0 110 43.6
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 2.0e-09 67.0 78 50.0
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.3e-09 66.2 93 44.1
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-08 63.5 43 76.7
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-08 63.5 43 76.7
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 1.2e-06 57.8 79 43.0
AagrBONN_evm.TU.Sc2ySwM_368.3272 Anthoceros agrestis HOM05D019097 ORTHO05D019635 2.6e-06 56.6 235 23.8
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 2.6e-06 56.6 57 50.9
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 3.5e-06 56.2 74 45.9
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-06 55.8 57 50.9


User provided reference genes

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