Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 3.8e-273 944.5 574 100.0
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.4e-54 217.6 685 36.8
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.4e-54 217.6 685 36.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 5.6e-51 206.5 652 35.1
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 3.4e-48 197.2 654 31.8
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 4.6e-45 186.8 654 31.5
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.0e-44 185.7 638 35.3
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 1.8e-44 184.9 676 34.9
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 1.8e-44 184.9 635 34.8
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 3.9e-44 183.7 443 36.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 7.4e-43 179.5 649 31.3
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.3e-41 173.3 632 33.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 3.4e-40 170.6 645 33.8
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 4.5e-40 170.2 688 32.1
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 7.6e-40 169.5 683 31.5
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.4e-38 165.2 223 50.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.9e-38 164.9 624 31.7
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 1.9e-38 164.9 688 31.8
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 3.9e-36 157.1 630 31.0
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 5.1e-36 156.8 218 48.2
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.5e-35 155.2 292 40.8
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.9e-35 154.8 450 34.7
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 1.9e-35 154.8 671 29.1
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 2.5e-35 154.5 218 47.2
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 3.3e-35 154.1 697 31.4
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.7e-35 153.3 634 33.1
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 9.7e-35 152.5 286 39.9
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.3e-34 152.1 661 29.8
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 2.2e-34 151.4 683 30.2
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 6.3e-34 149.8 466 34.1
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 6.3e-34 149.8 452 35.2
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.4e-33 147.9 644 30.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.9e-33 146.4 525 35.0
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.0e-32 144.8 468 34.0
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 2.0e-32 144.8 630 29.4
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 2.0e-32 144.8 390 35.1
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 3.4e-32 144.1 674 29.7
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 4.5e-32 143.7 660 30.6
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.9e-32 143.3 647 31.1
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 7.7e-32 142.9 674 30.3
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.0e-31 142.5 224 43.3
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 2.2e-31 141.4 690 27.2
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 5.0e-31 140.2 434 35.5
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 5.0e-31 140.2 684 30.7
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 4.2e-30 137.1 655 29.9
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 1.2e-29 135.6 529 31.9
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.6e-29 135.2 695 28.5
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 4.7e-29 133.7 399 35.6
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 1.0e-28 132.5 286 38.5
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.0e-28 131.0 220 43.2
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 5.1e-28 130.2 556 30.0
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 8.8e-28 129.4 499 31.1
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 8.8e-28 129.4 225 44.0
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 1.5e-27 128.6 622 29.1
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 2.6e-27 127.9 565 31.7
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.3e-27 127.5 655 28.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.4e-27 127.1 643 31.7
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 5.7e-27 126.7 533 31.9
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.7e-26 125.2 642 30.8
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.7e-26 125.2 522 31.0
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 4.8e-26 123.6 684 28.9
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 6.3e-26 123.2 418 33.0
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 8.2e-26 122.9 472 31.1
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 2.4e-25 121.3 630 29.0
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 5.3e-25 120.2 625 29.6
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 6.9e-25 119.8 640 30.5
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 9.1e-25 119.4 255 38.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.0e-24 118.2 654 30.3
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 2.0e-24 118.2 692 27.7
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 3.4e-24 117.5 661 28.6
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.4e-24 117.5 547 30.2
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 7.7e-24 116.3 635 33.2
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 7.7e-24 116.3 712 27.2
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.3e-23 115.5 631 30.4
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 2.9e-23 114.4 634 28.1
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.1e-22 112.5 651 28.6
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.9e-22 111.7 604 28.1
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.2e-22 110.9 91 68.1
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.5e-22 110.2 724 28.0
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 7.2e-22 109.8 613 28.7
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 1.2e-21 109.0 657 28.8
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 2.1e-21 108.2 643 30.3
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.8e-20 105.1 638 28.7
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 5.2e-20 103.6 225 39.1
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 8.8e-20 102.8 639 29.7
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 2.2e-18 98.2 639 25.7
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.8e-17 95.1 643 31.4
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 7.7e-16 89.7 170 35.3
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.0e-15 89.4 312 32.4
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 3.2e-14 84.3 116 47.4
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.2e-14 84.0 633 26.7
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 4.2e-14 84.0 633 26.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.2e-13 82.4 611 26.8
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 5.2e-12 77.0 322 28.6
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.5e-11 75.5 515 23.5
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 2.2e-10 71.6 538 30.7
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 6.3e-10 70.1 619 26.7
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.0e-08 65.1 116 37.9
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 2.9e-07 61.2 107 43.9
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.8e-07 60.8 459 26.4
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.1e-06 59.3 505 25.9
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 2.5e-06 58.2 126 34.1
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 7.2e-06 56.6 148 33.1


User provided reference genes

Program Settings