Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A856T36 Lonicera japonica HOM05D000005 ORTHO05D007073 2.4e-40 168.3 80 100.0
Lj2C874T10 Lonicera japonica HOM05D026672 ORTHO05D007073 2.6e-31 138.3 73 89.0
Lj2C880T2 Lonicera japonica HOM05D000005 ORTHO05D007073 1.5e-23 112.5 65 83.1
Lj2C880G10 Lonicera japonica HOM05D000005 ORTHO05D007073 1.7e-22 109.0 64 79.7
Lj2C877T6 Lonicera japonica HOM05D000005 ORTHO05D007073 5.0e-22 107.5 65 78.5
Lj2A878T50 Lonicera japonica HOM05D000005 ORTHO05D007073 6.5e-22 107.1 71 71.8
Lj2C857G8 Lonicera japonica HOM05D000005 ORTHO05D007073 8.5e-22 106.7 64 79.7
Lj2A874T40 Lonicera japonica HOM05D000005 ORTHO05D007073 2.5e-21 105.1 71 70.4
Lj2C876T10 Lonicera japonica HOM05D000005 ORTHO05D007073 5.5e-21 104.0 65 80.0
Lj2A878T49 Lonicera japonica HOM05D000005 ORTHO05D007073 1.6e-20 102.4 65 76.9
Lj2C875T4 Lonicera japonica HOM05D010250 ORTHO05D007073 2.0e-18 95.5 54 83.3
Lj3C285T0 Lonicera japonica HOM05D000005 ORTHO05D007073 4.7e-12 74.3 75 49.3
Lj3C285T2 Lonicera japonica HOM05D000005 ORTHO05D007073 4.0e-11 71.2 61 55.7
Lj3C299T0 Lonicera japonica HOM05D000005 ORTHO05D007073 4.0e-11 71.2 75 48.0
Lj7C434G0 Lonicera japonica HOM05D000005 ORTHO05D000239 2.6e-10 68.6 65 52.3
Lj2A760G27 Lonicera japonica HOM05D000005 ORTHO05D007073 1.7e-09 65.9 63 52.4
Lju158A2T30 Lonicera japonica HOM05D000005 ORTHO05D007073 1.7e-09 65.9 63 52.4
PGR142G0894 Punica granatum HOM05D000005 ORTHO05D000012 2.8e-09 65.1 63 54.0
PGR142G2685 Punica granatum HOM05D000005 ORTHO05D000012 2.8e-09 65.1 65 53.8
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 4.8e-09 64.3 85 37.6
PGR044G0500 Punica granatum HOM05D000005 ORTHO05D011459 1.8e-08 62.4 63 52.4
Nitab4.5_0013183g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.4e-08 62.0 76 39.5
PGR044G1274 Punica granatum HOM05D000005 ORTHO05D011459 2.4e-08 62.0 60 50.0
Dinv17761 Davidia involucrata HOM05D000005 ORTHO05D000012 4.1e-08 61.2 68 44.1
Lalb_Chr20g0110681 Lupinus albus HOM05D000005 ORTHO05D000012 4.1e-08 61.2 65 46.2
PGR044G0625 Punica granatum HOM05D000005 ORTHO05D000012 4.1e-08 61.2 63 49.2
PGR142G0294 Punica granatum HOM05D000005 ORTHO05D000012 4.1e-08 61.2 62 50.0
Eucgr.H03761 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.3e-08 60.8 66 47.0
ATR1152G038 Amborella trichopoda HOM05D000005 ORTHO05D000012 7.0e-08 60.5 65 44.6
Medtr3g072140 Medicago truncatula HOM05D000005 ORTHO05D000012 9.1e-08 60.1 65 46.2
Glyma.03G088100 Glycine max HOM05D000005 ORTHO05D000012 1.2e-07 59.7 68 42.6
Lj7A477T80 Lonicera japonica HOM05D000005 ORTHO05D007073 1.2e-07 59.7 54 53.7
MD09G1045100 Malus domestica HOM05D000005 ORTHO05D000012 1.2e-07 59.7 64 45.3
PGR004G1672 Punica granatum HOM05D000005 ORTHO05D000012 1.2e-07 59.7 60 50.0
Cpa.g.sc4.87 Carica papaya HOM05D000005 ORTHO05D000012 1.6e-07 59.3 85 32.9
Potri.001G028750 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.6e-07 59.3 73 43.8
PGR142G2505 Punica granatum HOM05D000005 ORTHO05D000012 1.6e-07 59.3 67 50.7
arahy.Tifrunner.gnm1.ann1.BBI6IF Arachis hypogaea HOM05D000005 ORTHO05D000012 2.0e-07 58.9 64 45.3
Glyma.16G085900 Glycine max HOM05D000005 ORTHO05D000012 2.0e-07 58.9 65 44.6
Lj3C475T2 Lonicera japonica HOM05D000005 ORTHO05D007073 2.0e-07 58.9 71 46.5
PGR042G1273 Punica granatum HOM05D000005 ORTHO05D000012 2.0e-07 58.9 62 53.2
Eucgr.H03827 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.7e-07 58.5 63 42.9
Potri.002G056100 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.7e-07 58.5 77 40.3
Lj3g0007342 Lotus japonicus HOM05D000005 ORTHO05D000012 3.5e-07 58.2 63 49.2
MD09G1024200 Malus domestica HOM05D000005 ORTHO05D000012 3.5e-07 58.2 64 45.3
Medtr8g012180 Medicago truncatula HOM05D000005 ORTHO05D000012 3.5e-07 58.2 64 43.8
Peaxi162Scf00828g00413 Petunia axillaris HOM05D000005 ORTHO05D000012 3.5e-07 58.2 65 40.0
TWI36G0972 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 3.5e-07 58.2 72 38.9
Duzib268G0999 Durio zibethinus HOM05D000005 ORTHO05D000012 4.5e-07 57.8 64 40.6
Lj3A419T49 Lonicera japonica HOM05D000005 ORTHO05D007073 4.5e-07 57.8 71 45.1
Medtr8g012200 Medicago truncatula HOM05D000005 ORTHO05D000012 4.5e-07 57.8 65 44.6
PGR142G4113 Punica granatum HOM05D000005 ORTHO05D000012 4.5e-07 57.8 65 46.2
TPR.G36030 Trifolium pratense HOM05D000005 ORTHO05D000012 4.5e-07 57.8 65 44.6
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 4.5e-07 57.8 60 43.3
CiPaw.01G299200 Carya illinoinensis HOM05D000005 ORTHO05D000012 5.9e-07 57.4 68 41.2
Eucgr.L00700 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.9e-07 57.4 62 50.0
FAN12G4229 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.9e-07 57.4 65 43.1
Lj3g0002296 Lotus japonicus HOM05D000005 ORTHO05D000012 5.9e-07 57.4 67 44.8
Lj3g0018399 Lotus japonicus HOM05D000005 ORTHO05D000012 5.9e-07 57.4 65 43.1
Medtr4g015060 Medicago truncatula HOM05D000005 ORTHO05D000012 5.9e-07 57.4 66 42.4
Prupe.1G263400 Prunus persica HOM05D000005 ORTHO05D000012 5.9e-07 57.4 74 37.8
Prupe.1G263500 Prunus persica HOM05D000005 ORTHO05D000012 5.9e-07 57.4 68 38.2
PGR142G0579 Punica granatum HOM05D000005 ORTHO05D000012 5.9e-07 57.4 62 46.8
PGR142G2275 Punica granatum HOM05D000005 ORTHO05D000012 5.9e-07 57.4 63 42.9
TAR371G0186 Trochodendron aralioides HOM05D000005 ORTHO05D000012 5.9e-07 57.4 60 45.0
Eucgr.C03975 Eucalyptus grandis HOM05D000005 ORTHO05D007073 7.7e-07 57.0 66 43.9
Medtr0468s0010 Medicago truncatula HOM05D000005 ORTHO05D000012 7.7e-07 57.0 65 44.6
PGR142G0403 Punica granatum HOM05D000005 ORTHO05D000012 7.7e-07 57.0 65 50.8
Eucgr.C00020 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.0e-06 56.6 63 46.0
Lj7A486G71 Lonicera japonica HOM05D000005 ORTHO05D007073 1.0e-06 56.6 69 43.5
Nn8g40975 Nelumbo nucifera HOM05D000005 ORTHO05D000012 1.0e-06 56.6 63 41.3
PGR142G3725 Punica granatum HOM05D000005 ORTHO05D000012 1.0e-06 56.6 59 50.8
SEGI_04239 Sequoiadendron giganteum HOM05D000005 ORTHO05D000012 1.0e-06 56.6 71 36.6
SEGI_28095 Sequoiadendron giganteum HOM05D000005 ORTHO05D000012 1.0e-06 56.6 71 36.6
CANSAT11G1816 Cannabis sativa HOM05D000005 ORTHO05D000012 1.3e-06 56.2 68 36.8
Eucgr.H03745 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.3e-06 56.2 62 48.4
Lj7C477T3 Lonicera japonica HOM05D000005 ORTHO05D011459 1.3e-06 56.2 63 49.2
Phvul.010G026000 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 1.3e-06 56.2 63 44.4
PGR142G1610 Punica granatum HOM05D000005 ORTHO05D000012 1.3e-06 56.2 67 50.7
PGR142G3679 Punica granatum HOM05D000005 ORTHO05D000012 1.3e-06 56.2 65 46.2
PGR142G4263 Punica granatum HOM05D000005 ORTHO05D000012 1.3e-06 56.2 60 50.0
CiPaw.13G072500 Carya illinoinensis HOM05D000005 ORTHO05D000012 1.7e-06 55.8 68 38.2
Medtr3g022930 Medicago truncatula HOM05D000005 ORTHO05D000012 1.7e-06 55.8 65 44.6
PGR142G2594 Punica granatum HOM05D000005 ORTHO05D000012 1.7e-06 55.8 63 42.9
PGR142G4214 Punica granatum HOM05D000005 ORTHO05D000012 1.7e-06 55.8 59 50.8
Duzib212G0136 Durio zibethinus HOM05D000005 ORTHO05D000012 2.2e-06 55.5 68 42.6
Duzib212G0595 Durio zibethinus HOM05D000005 ORTHO05D000012 2.2e-06 55.5 68 42.6
Duzib212G0923 Durio zibethinus HOM05D000005 ORTHO05D000012 2.2e-06 55.5 68 42.6
FvH4_4g35420 Fragaria vesca HOM05D000005 ORTHO05D000012 2.2e-06 55.5 65 41.5
Lj3C419T0 Lonicera japonica HOM05D000005 ORTHO05D007073 2.2e-06 55.5 64 46.9
Manes.06G012900 Manihot esculenta HOM05D000005 ORTHO05D000012 2.2e-06 55.5 68 41.2
Medtr4g014570 Medicago truncatula HOM05D000005 ORTHO05D000012 2.2e-06 55.5 66 40.9
Medtr8g012080 Medicago truncatula HOM05D000005 ORTHO05D000012 2.2e-06 55.5 64 42.2
Prupe.1G263600 Prunus persica HOM05D000005 ORTHO05D000012 2.2e-06 55.5 68 36.8
PGSC0003DMG401022603 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.2e-06 55.5 65 38.5
Thecc.04G194300 Theobroma cacao HOM05D000005 ORTHO05D000012 2.2e-06 55.5 56 46.4
TPR.G31909 Trifolium pratense HOM05D000005 ORTHO05D000012 2.2e-06 55.5 62 46.8
TAR371G0499 Trochodendron aralioides HOM05D000005 ORTHO05D000012 2.2e-06 55.5 60 43.3
ATR1152G012 Amborella trichopoda HOM05D000005 ORTHO05D000012 2.9e-06 55.1 63 44.4
ECA234G1711 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.9e-06 55.1 69 37.7
Lj3C411G2 Lonicera japonica HOM05D000005 ORTHO05D007073 2.9e-06 55.1 77 45.5
MD09G1044800 Malus domestica HOM05D000005 ORTHO05D001874 2.9e-06 55.1 64 43.8
PGR142G4010 Punica granatum HOM05D000005 ORTHO05D000012 2.9e-06 55.1 67 47.8
PGR142G4362 Punica granatum HOM05D000005 ORTHO05D000239 2.9e-06 55.1 65 46.2
SEGI_12021 Sequoiadendron giganteum HOM05D000005 ORTHO05D000012 2.9e-06 55.1 71 36.6
TWI36G0858 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 2.9e-06 55.1 72 37.5
arahy.Tifrunner.gnm1.ann1.6223I5 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.8e-06 54.7 78 37.2
CiPaw.13G072200 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.8e-06 54.7 68 38.2
CiPaw.16G068800 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.8e-06 54.7 64 39.1
Duzib268G1757 Durio zibethinus HOM05D000005 ORTHO05D000012 3.8e-06 54.7 66 43.9
Medtr2g040220 Medicago truncatula HOM05D000005 ORTHO05D000012 3.8e-06 54.7 64 39.1
Medtr4g015050 Medicago truncatula HOM05D000005 ORTHO05D000012 3.8e-06 54.7 66 39.4
Peaxi162Scf00209g00939 Petunia axillaris HOM05D000005 ORTHO05D000012 3.8e-06 54.7 65 36.9
PGR044G1303 Punica granatum HOM05D000005 ORTHO05D011459 3.8e-06 54.7 66 40.9
Solyc01g113620.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.8e-06 54.7 67 35.8
Sopen01g044060 Solanum pennellii HOM05D000005 ORTHO05D000012 3.8e-06 54.7 67 35.8
TPR.G21181 Trifolium pratense HOM05D000005 ORTHO05D000012 3.8e-06 54.7 66 39.4
TAR371G0085 Trochodendron aralioides HOM05D000005 ORTHO05D000012 3.8e-06 54.7 60 43.3
ATR0598G226 Amborella trichopoda HOM05D000005 ORTHO05D000012 5.0e-06 54.3 64 42.2
arahy.Tifrunner.gnm1.ann1.3Z2FFP Arachis hypogaea HOM05D000005 ORTHO05D000012 5.0e-06 54.3 64 40.6
CAN.G27.62 Capsicum annuum HOM05D000005 ORTHO05D000012 5.0e-06 54.3 65 38.5
Eucgr.C01430 Eucalyptus grandis HOM05D000005 ORTHO05D000012 5.0e-06 54.3 51 52.9
FvH4_7g17700 Fragaria vesca HOM05D000005 ORTHO05D000012 5.0e-06 54.3 68 38.2
FAN06G1031 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.0e-06 54.3 68 38.2
PGR042G3882 Punica granatum HOM05D000005 ORTHO05D000012 5.0e-06 54.3 65 46.2
PGR044G1265 Punica granatum HOM05D000005 ORTHO05D011898 5.0e-06 54.3 73 37.0
QL03p067966 Quercus lobata HOM05D000005 ORTHO05D000012 5.0e-06 54.3 66 39.4
TPR.G31904 Trifolium pratense HOM05D000005 ORTHO05D000012 5.0e-06 54.3 61 44.3
TAR371G0074 Trochodendron aralioides HOM05D000005 ORTHO05D000012 5.0e-06 54.3 60 43.3
TAR371G0120 Trochodendron aralioides HOM05D000005 ORTHO05D000012 5.0e-06 54.3 60 41.7
ATR0315G005 Amborella trichopoda HOM05D000005 ORTHO05D000012 6.5e-06 53.9 62 43.5
arahy.Tifrunner.gnm1.ann1.J60GAE Arachis hypogaea HOM05D000005 ORTHO05D000012 6.5e-06 53.9 64 40.6
CiPaw.14G075500 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.5e-06 53.9 64 46.9
Cc11_g13880 Coffea canephora HOM05D000005 ORTHO05D000012 6.5e-06 53.9 64 39.1
FAN04G1525 Fragaria x ananassa HOM05D000005 ORTHO05D000012 6.5e-06 53.9 65 36.9
Gohir.D02G168100 Gossypium hirsutum HOM05D000005 ORTHO05D000012 6.5e-06 53.9 73 38.4
Medtr8g011710 Medicago truncatula HOM05D000005 ORTHO05D000012 6.5e-06 53.9 65 44.6
TPR.G31903 Trifolium pratense HOM05D000005 ORTHO05D000012 6.5e-06 53.9 66 40.9
TWI36G1442 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 6.5e-06 53.9 64 45.3
Ah.03g132160 Amaranthus hybridus HOM05D000005 ORTHO05D000012 8.5e-06 53.5 43 51.2
Lsat_1_v5_gn_1_77600 Lactuca sativa HOM05D000005 ORTHO05D000012 8.5e-06 53.5 57 42.1
Lj3C570T3 Lonicera japonica HOM05D000005 ORTHO05D007073 8.5e-06 53.5 63 44.4
Medtr2g040260 Medicago truncatula HOM05D000005 ORTHO05D000012 8.5e-06 53.5 64 39.1
Phvul.002G171400 Phaseolus vulgaris HOM05D000005 ORTHO05D000012 8.5e-06 53.5 79 35.4
Potri.019G001600 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.5e-06 53.5 64 39.1
PGR031G3491 Punica granatum HOM05D000005 ORTHO05D000012 8.5e-06 53.5 63 39.7
PGR142G3263 Punica granatum HOM05D000005 ORTHO05D336890 8.5e-06 53.5 63 39.7
PGR142G3278 Punica granatum HOM05D000005 ORTHO05D000012 8.5e-06 53.5 59 49.2
RcHm_v2.0_Chr7g0234501 Rosa chinensis HOM05D000005 ORTHO05D000012 8.5e-06 53.5 65 41.5
TPR.G20786 Trifolium pratense HOM05D000005 ORTHO05D000012 8.5e-06 53.5 47 51.1
TPR.G2720 Trifolium pratense HOM05D000005 ORTHO05D034600 8.5e-06 53.5 51 51.0


User provided reference genes

Program Settings