Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 3.6e-283 977.6 514 100.0
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 5.6e-167 591.7 522 65.7
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.9e-163 579.3 514 63.8
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.1e-146 521.5 519 59.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 6.6e-144 515.0 516 61.0
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-141 507.7 513 59.8
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.1e-133 481.1 425 63.1
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 3.8e-131 472.6 502 58.0
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.1e-130 471.1 502 56.0
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 9.3e-130 468.0 520 52.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.5e-127 459.9 519 51.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 4.3e-127 459.1 519 51.6
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 3.7e-126 456.1 513 53.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.8e-125 453.8 518 51.0
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.6e-124 449.9 501 53.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 7.6e-124 448.4 521 52.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.4e-122 444.1 510 53.7
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 1.9e-122 443.7 514 54.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.5e-122 443.4 513 52.2
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 7.9e-121 438.3 502 53.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.1e-120 435.6 510 51.8
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 3.3e-119 433.0 507 53.8
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 9.7e-119 431.4 528 52.3
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.6e-118 430.6 514 51.4
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.1e-117 427.9 510 52.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.8e-117 427.2 510 52.2
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.5e-116 424.1 513 51.7
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 2.0e-116 423.7 519 51.1
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.0e-116 423.7 532 48.7
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 2.0e-116 423.7 531 49.0
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 1.0e-115 421.4 520 51.2
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 2.2e-115 420.2 525 49.3
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 2.2e-115 420.2 515 50.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.1e-113 413.7 508 52.0
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.1e-113 413.7 509 50.7
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 6.1e-113 412.1 483 53.0
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 7.9e-113 411.8 518 51.2
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 2.3e-112 410.2 507 51.7
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.9e-112 409.5 506 49.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 5.1e-112 409.1 506 50.2
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.5e-111 407.5 522 47.9
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.3e-110 404.4 513 50.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.8e-110 403.3 506 50.2
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.3e-110 402.1 513 50.1
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.4e-109 400.2 515 47.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.0e-107 394.8 513 49.7
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 9.4e-106 388.3 523 49.5
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.7e-105 386.0 513 47.0
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.9e-104 382.9 509 48.7
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.1e-103 381.3 541 44.9
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 3.1e-101 373.2 508 47.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 9.1e-101 371.7 538 45.0
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.5e-100 370.9 502 47.6
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 4.5e-100 369.4 538 45.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 7.7e-100 368.6 516 47.1
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.2e-99 367.1 506 50.0
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.0e-99 365.9 524 46.0
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 8.5e-99 365.2 523 47.0
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 9.4e-98 361.7 455 51.2
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.7e-97 359.4 518 46.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 4.0e-96 356.3 507 46.5
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 5.2e-96 355.9 532 46.8
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 5.2e-96 355.9 511 46.2
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 8.8e-96 355.1 536 44.6
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.3e-95 353.2 508 46.1
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-93 348.2 511 46.2
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.4e-93 347.8 513 46.2
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.0e-92 344.0 497 45.1
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.5e-90 337.8 520 43.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.5e-90 337.0 538 41.6
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-90 335.9 514 44.6
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.5e-90 335.9 521 44.7
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 9.4e-90 335.1 507 46.2
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 4.7e-89 332.8 510 43.3
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 6.1e-89 332.4 514 45.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.0e-88 331.6 396 49.7
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.0e-88 331.6 524 44.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 1.4e-88 331.3 531 43.7
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.4e-88 331.3 447 47.7
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.3e-86 324.7 510 44.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 2.2e-86 323.9 446 47.8
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 4.8e-86 322.8 523 45.3
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.1e-85 319.7 445 47.4
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 4.1e-85 319.7 531 42.7
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 2.0e-84 317.4 473 45.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 3.5e-84 316.6 424 49.5
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.3e-83 314.7 434 46.8
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.4e-82 308.5 522 40.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-78 298.1 519 40.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 4.9e-78 296.2 515 40.0
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.1e-77 295.0 503 39.2
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.4e-77 294.7 524 40.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.1e-77 293.1 419 43.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 3.5e-76 290.0 520 38.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.3e-75 288.1 479 40.9
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 2.3e-75 287.3 541 41.6
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 2.9e-75 287.0 444 45.5
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.0e-75 286.2 513 39.0
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.3e-74 283.1 521 38.8
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 5.6e-74 282.7 413 46.2
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.6e-73 281.2 515 38.6
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 1.4e-72 278.1 480 43.1
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 6.8e-72 275.8 456 42.3
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 7.5e-71 272.3 514 40.9
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.2e-70 270.8 452 41.6
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 3.7e-70 270.0 452 42.7
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.8e-69 267.7 362 47.0
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.9e-66 257.7 257 54.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 2.8e-65 253.8 516 40.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 4.7e-65 253.1 523 38.8
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 8.0e-65 252.3 476 37.6
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.3e-64 250.8 537 38.5
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.0e-64 250.0 349 45.6
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.0e-61 239.2 436 39.4
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.3e-59 235.0 447 39.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 5.0e-59 233.0 514 38.5
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-58 231.5 427 39.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.3e-58 229.9 427 40.5
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 9.5e-58 228.8 427 39.8
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.6e-57 228.0 504 39.5
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-57 228.0 427 39.8
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.6e-57 226.9 427 39.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.1e-56 225.3 454 39.4
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-54 218.0 453 33.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.9e-54 217.2 520 33.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.9e-53 214.5 512 35.0
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 2.7e-52 210.7 430 38.8
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.7e-51 208.0 456 37.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 3.0e-51 207.2 502 35.1
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 4.7e-49 199.9 467 36.8
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 4.7e-49 199.9 367 38.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.3e-48 197.6 426 38.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-47 194.9 449 38.8
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.1e-45 186.8 490 33.5
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.6e-41 174.9 403 34.0
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 2.1e-41 174.5 144 65.3
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.6e-41 173.7 419 34.4
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 4.7e-41 173.3 383 38.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 8.9e-40 169.1 209 48.3
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.0e-39 167.9 411 34.8
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.0e-39 167.9 411 34.8
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.2e-38 164.5 476 30.5
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 9.3e-37 159.1 135 67.4
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.6e-36 158.3 435 34.5
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.3e-35 154.5 181 45.9
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 3.9e-35 153.7 299 42.1
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.3e-34 150.6 442 32.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 7.6e-31 139.4 139 51.8
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 4.9e-30 136.7 368 33.4
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 9.3e-29 132.5 160 51.2
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.0e-27 129.0 530 31.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.1e-24 119.0 137 51.8
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 9.0e-24 115.9 221 38.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.0e-23 114.8 520 25.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.2e-21 107.5 186 43.0
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.2e-21 107.5 539 28.8
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.6e-15 87.8 425 27.1
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 4.5e-15 87.0 220 33.6
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 1.3e-14 85.5 209 32.5
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.4e-14 82.8 148 35.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.4e-14 82.8 396 28.0
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 8.4e-14 82.8 205 33.7
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 3.2e-13 80.9 137 38.0
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 7.1e-13 79.7 65 61.5
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.7e-12 77.8 305 27.5
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.9e-12 76.3 314 27.7
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 7.9e-12 76.3 180 38.9
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.0e-11 75.9 305 27.2
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-11 75.5 391 28.6
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 2.5e-10 71.2 57 61.4
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 5.7e-10 70.1 232 27.6
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 2.1e-09 68.2 244 29.5
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 6.9e-08 63.2 66 45.5
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.0e-08 62.8 79 51.9
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 2.6e-07 61.2 215 29.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-07 60.8 44 61.4


User provided reference genes

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