Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A793G3 Lonicera japonica HOM05D006633 ORTHO05D008259 2.1e-129 465.7 235 100.0
QL01p010451 Quercus lobata HOM05D006633 ORTHO05D008259 1.5e-103 379.8 222 84.7
PGR102G1790 Punica granatum HOM05D006633 ORTHO05D008259 7.8e-100 367.5 238 77.7
Thecc.09G197800 Theobroma cacao HOM05D006633 ORTHO05D008259 3.9e-99 365.2 215 82.3
Ciclev10015880m.g Citrus clementina HOM05D006633 ORTHO05D008259 5.1e-99 364.8 224 79.0
COL.COLO4_35074 Corchorus olitorius HOM05D006633 ORTHO05D008259 6.6e-99 364.4 220 80.5
Prupe.6G001800 Prunus persica HOM05D006633 ORTHO05D008259 6.6e-99 364.4 209 84.7
GSVIVG01025500001 Vitis vinifera HOM05D006633 ORTHO05D008259 8.7e-99 364.0 204 87.3
RcHm_v2.0_Chr5g0084001 Rosa chinensis HOM05D006633 ORTHO05D008259 1.1e-98 363.6 220 82.3
HanXRQChr14g0437151 Helianthus annuus HOM05D006633 ORTHO05D008259 1.5e-98 363.2 226 80.5
Manes.17G052500 Manihot esculenta HOM05D006633 ORTHO05D008259 1.5e-98 363.2 219 78.5
Potri.003G222900 Populus trichocarpa HOM05D006633 ORTHO05D008259 2.5e-98 362.5 222 80.2
Eucgr.B03588 Eucalyptus grandis HOM05D006633 ORTHO05D008259 3.3e-98 362.1 225 79.1
Cc01_g00320 Coffea canephora HOM05D006633 ORTHO05D008259 4.3e-98 361.7 205 85.4
Sabra03G0165800 Salix brachista HOM05D006633 ORTHO05D008259 7.3e-98 360.9 222 79.7
ECA238G0103 Erigeron canadensis HOM05D006633 ORTHO05D008259 1.3e-97 360.1 221 80.5
Lsat_1_v5_gn_2_51040 Lactuca sativa HOM05D006633 ORTHO05D008259 1.3e-97 360.1 226 81.4
Atru.chr3.2065 Acer truncatum HOM05D006633 ORTHO05D008259 1.6e-97 359.8 214 82.2
CiPaw.13G178900 Carya illinoinensis HOM05D006633 ORTHO05D008259 2.8e-97 359.0 204 84.8
FAN16G0253 Fragaria x ananassa HOM05D006633 ORTHO05D008259 4.8e-97 358.2 221 80.1
Gohir.D08G024900 Gossypium hirsutum HOM05D006633 ORTHO05D008259 4.8e-97 358.2 216 80.6
Cpa.g.sc119.27 Carica papaya HOM05D006633 ORTHO05D008259 6.2e-97 357.8 222 78.4
Actinidia16230 Actinidia chinensis HOM05D006633 ORTHO05D008259 8.1e-97 357.5 221 79.2
FAN21G1569 Fragaria x ananassa HOM05D006633 ORTHO05D008259 1.1e-96 357.1 221 80.1
Actinidia00914 Actinidia chinensis HOM05D006633 ORTHO05D008259 1.4e-96 356.7 221 79.2
Duzib168G0472 Durio zibethinus HOM05D006633 ORTHO05D008259 1.8e-96 356.3 214 80.8
Gohir.A08G014400 Gossypium hirsutum HOM05D006633 ORTHO05D008259 1.8e-96 356.3 216 80.1
Gorai.004G020300 Gossypium raimondii HOM05D006633 ORTHO05D008259 1.8e-96 356.3 212 81.6
Oeu060898.1 Olea europaea HOM05D006633 ORTHO05D008259 2.4e-96 355.9 208 81.7
TAR633G1699 Trochodendron aralioides HOM05D006633 ORTHO05D008259 2.4e-96 355.9 223 77.6
FAN11G3357 Fragaria x ananassa HOM05D006633 ORTHO05D008259 9.0e-96 354.0 221 79.6
TWI34G2025 Tripterygium wilfordii HOM05D006633 ORTHO05D008259 1.2e-95 353.6 213 83.1
CAN.G431.4 Capsicum annuum HOM05D006633 ORTHO05D008259 2.0e-95 352.8 218 80.3
CANSAT11G1927 Cannabis sativa HOM05D006633 ORTHO05D008259 2.6e-95 352.4 221 79.2
PSO384G1804 Papaver somniferum HOM05D006633 ORTHO05D008259 9.9e-95 350.5 221 76.5
Nn7g35825 Nelumbo nucifera HOM05D006633 ORTHO05D008259 1.3e-94 350.1 225 76.4
SGA_v2.0_scaffold3G01722 Striga asiatica HOM05D000412 ORTHO05D000429 2.2e-94 349.4 226 77.0
PSO339G0565 Papaver somniferum HOM05D006633 ORTHO05D008259 4.9e-94 348.2 221 76.0
Rhsim13G0234200 Rhododendron simsii HOM05D006633 ORTHO05D008259 4.9e-94 348.2 230 74.8
Nitab4.5_0008322g0010 Nicotiana tabacum HOM05D006633 ORTHO05D008259 6.4e-94 347.8 225 77.3
THA.LOC104813477 Tarenaya hassleriana HOM05D006633 ORTHO05D008259 6.4e-94 347.8 219 77.2
Nitab4.5_0000075g0280 Nicotiana tabacum HOM05D006633 ORTHO05D008259 1.9e-93 346.3 222 77.9
MELO3C014730.2 Cucumis melo HOM05D006633 ORTHO05D008259 5.4e-93 344.7 221 74.7
Sopen01g017000 Solanum pennellii HOM05D006633 ORTHO05D008259 5.4e-93 344.7 214 80.4
CsaV3_4G017570 Cucumis sativus L. HOM05D006633 ORTHO05D008259 9.3e-93 344.0 218 75.2
MD11G1001800 Malus domestica HOM05D006633 ORTHO05D008259 1.6e-92 343.2 219 78.1
Solyc01g028870.3 Solanum lycopersicum HOM05D006633 ORTHO05D008259 1.6e-92 343.2 214 79.9
arahy.Tifrunner.gnm1.ann1.B7F07X Arachis hypogaea HOM05D006633 ORTHO05D008259 2.7e-92 342.4 215 78.6
Glyma.20G024400 Glycine max HOM05D006633 ORTHO05D008259 1.9e-90 336.3 210 79.5
Sed0023197 Sechium edule HOM05D006633 ORTHO05D008259 2.5e-90 335.9 215 75.8
Migut.D02577 Erythranthe guttata HOM05D006633 ORTHO05D008259 3.3e-90 335.5 210 75.7
Phvul.002G101000 Phaseolus vulgaris HOM05D006633 ORTHO05D008259 1.6e-89 333.2 207 79.7
Glyma.07G224400 Glycine max HOM05D006633 ORTHO05D008259 4.8e-89 331.6 207 79.7
Lalb_Chr09g0328921 Lupinus albus HOM05D006633 ORTHO05D008259 4.8e-89 331.6 201 80.6
Aa31LG5G11730 Aethionema arabicum HOM05D006633 ORTHO05D008259 8.1e-89 330.9 198 79.3
CARHR233930 Cardamine hirsuta HOM05D006633 ORTHO05D008259 8.1e-89 330.9 215 74.9
Ca_18789_v3 Cicer arietinum L. HOM05D006633 ORTHO05D008259 1.1e-88 330.5 207 78.7
Aqoxy2G00572 Aquilegia oxysepala HOM05D006633 ORTHO05D008259 1.4e-88 330.1 216 73.6
AL7G26590 Arabidopsis lyrata HOM05D006633 ORTHO05D008259 1.8e-88 329.7 215 75.3
AT4G26370 Arabidopsis thaliana HOM05D006633 ORTHO05D008259 4.0e-88 328.6 209 77.0
SalBow2G0284 Salvia bowleyana HOM05D006633 ORTHO05D008259 4.0e-88 328.6 209 76.6
Thhalv10025833m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 6.9e-88 327.8 214 75.7
BraA03t14735Z Brassica rapa HOM05D006633 ORTHO05D008259 1.2e-87 327.0 209 76.6
Sp7g24290 Schrenkiella parvula HOM05D006633 ORTHO05D008259 1.5e-87 326.6 203 77.3
MSTRG.18887 Avicennia marina HOM05D006633 ORTHO05D008259 2.0e-87 326.2 219 73.5
A03p56650 Brassica napus HOM05D006633 ORTHO05D008259 2.0e-87 326.2 209 76.6
Carub.0007s1458 Capsella rubella HOM05D006633 ORTHO05D008259 3.4e-87 325.5 215 74.4
BcaNung02426 Brassica carinata HOM05D006633 ORTHO05D008259 4.5e-87 325.1 203 77.3
DCAR_001964 Daucus carota HOM05D006633 ORTHO05D008259 5.8e-87 324.7 206 76.7
BcaC06g32755 Brassica carinata HOM05D006633 ORTHO05D008259 7.6e-87 324.3 212 75.0
C07p54850 Brassica napus HOM05D006633 ORTHO05D008259 2.2e-86 322.8 214 74.3
C01p22200 Brassica napus HOM05D006633 ORTHO05D008259 2.9e-86 322.4 198 78.3
BolC1t02150H Brassica oleracea HOM05D006633 ORTHO05D008259 2.9e-86 322.4 198 78.3
BraA01t01713Z Brassica rapa HOM05D006633 ORTHO05D008259 2.9e-86 322.4 198 78.3
A01p17600 Brassica napus HOM05D006633 ORTHO05D008259 1.1e-85 320.5 198 77.8
Haze_22925 Corylus avellana HOM05D006633 ORTHO05D008259 1.2e-84 317.0 221 74.2
Peaxi162Scf00186g01010 Petunia axillaris HOM05D006633 ORTHO05D008259 2.1e-84 316.2 220 75.0
Lj4g0000825 Lotus japonicus HOM05D006633 ORTHO05D008259 1.0e-83 313.9 201 76.1
Psat7g133240 Pisum sativum HOM05D006633 ORTHO05D008259 4.3e-82 308.5 214 72.0
BcaC09g50693 Brassica carinata HOM05D006633 ORTHO05D008259 1.3e-81 307.0 204 73.5
ATR0697G106 Amborella trichopoda HOM05D006633 ORTHO05D008259 1.0e-78 297.4 217 68.2
Hund16643 Selenicereus undatus HOM05D006633 ORTHO05D008259 2.2e-78 296.2 208 70.2
Sc22g0000060 Simmondsia chinensis HOM05D006633 ORTHO05D008259 8.4e-78 294.3 184 76.6
AUR62011548 Chenopodium quinoa HOM05D006633 ORTHO05D008259 3.5e-76 288.9 222 65.8
arahy.Tifrunner.gnm1.ann1.UCUG5X Arachis hypogaea HOM05D006633 ORTHO05D008259 6.0e-76 288.1 262 59.9
HPP92_027714 Vanilla planifolia HOM05D006633 ORTHO05D008259 2.3e-75 286.2 224 62.5
BcaC06g32753 Brassica carinata HOM05D006633 ORTHO05D008259 5.1e-75 285.0 199 72.4
Ah.01g020780 Amaranthus hybridus HOM05D006633 ORTHO05D008259 1.1e-74 283.9 215 65.1
Os03g0656900 Oryza sativa ssp. japonica HOM05D006633 ORTHO05D008259 1.9e-74 283.1 196 68.9
VMungo0251G3366 Vigna mungo HOM05D006633 ORTHO05D008259 4.3e-74 282.0 178 79.2
Sc11g0009420 Simmondsia chinensis HOM05D006633 ORTHO05D008259 3.7e-73 278.9 173 79.2
TPR.G34055 Trifolium pratense HOM05D006633 ORTHO05D008259 1.9e-69 266.5 180 73.9
Medtr4g083370 Medicago truncatula HOM05D006633 ORTHO05D008259 2.5e-69 266.2 200 71.0
unitig_22.g5858 Utricularia gibba HOM05D006633 ORTHO05D008259 1.3e-65 253.8 212 61.3
FvH4_3g45910 Fragaria vesca HOM05D006633 ORTHO05D008259 2.2e-65 253.1 172 75.0
FAN25G3644 Fragaria x ananassa HOM05D006633 ORTHO05D008259 6.1e-60 235.0 221 57.5
Hma1.2p1_2123F.1_g314533 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 7.4e-58 228.0 140 80.0
Thhalv10026040m.g Eutrema salsugineum HOM05D006633 ORTHO05D008259 4.5e-55 218.8 150 72.0
Zm00001eb052690 Zea mays HOM05D006633 ORTHO05D008259 4.7e-52 208.8 196 55.1
vmacro04274 Vaccinium macrocarpon HOM05D006633 ORTHO05D008259 1.7e-46 190.3 151 64.9
SMO228G0116 Selaginella moellendorffii HOM05D006633 ORTHO05D008259 2.3e-43 179.9 197 47.7
CSS0002459 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 2.0e-39 166.8 91 85.7
CSS0031986 Camellia sinensis var. sinensis HOM05D006633 ORTHO05D008259 1.9e-37 160.2 95 81.1
Pp3c10_23950 Physcomitrium patens HOM05D006633 ORTHO05D008259 3.0e-35 152.9 196 41.3
ClCG02G024430 Citrullus lanatus HOM05D006633 ORTHO05D008259 6.8e-35 151.8 96 75.0
Zm00001eb218200 Zea mays HOM05D006633 ORTHO05D008259 5.7e-34 148.7 110 64.5
Hund09324 Selenicereus undatus HOM05D006633 ORTHO05D008259 8.3e-33 144.8 82 80.5
EL10Ac9g21929 Beta vulgaris HOM05D006633 ORTHO05D008259 1.0e-30 137.9 98 69.4
Mapoly0006s0155 Marchantia polymorpha HOM05D006633 ORTHO05D008259 4.7e-28 129.0 201 37.3
AUR62016367 Chenopodium quinoa HOM05D006633 ORTHO05D008259 6.1e-28 128.6 115 55.7
HanXRQChr15g0489901 Helianthus annuus HOM05D006633 ORTHO05D008259 2.2e-25 120.2 77 74.0
Hma1.2p1_1877F.1_g306330 Hydrangea macrophylla HOM05D006633 ORTHO05D008259 3.7e-25 119.4 134 52.2
HanXRQChr11g0336181 Helianthus annuus HOM05D006633 ORTHO05D008259 1.6e-20 104.0 70 72.9
CDE10G1061 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 1.5e-18 97.4 67 68.7
SEGI_24744 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 2.0e-18 97.1 60 71.7
COL.COLO4_37952 Corchorus olitorius HOM05D006633 ORTHO05D008259 7.5e-18 95.1 58 77.6
CDE10G0014 Ceratophyllum demersum HOM05D006633 ORTHO05D008259 1.3e-17 94.4 65 72.3
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 3.7e-17 92.8 56 75.0
SEGI_20653 Sequoiadendron giganteum HOM05D006633 ORTHO05D008259 1.7e-09 67.4 57 59.6
AagrBONN_evm.TU.Sc2ySwM_117.296 Anthoceros agrestis HOM05D006633 ORTHO05D008259 2.7e-07 60.1 60 45.0


User provided reference genes

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