Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 8.4e-55 216.9 115 100.0
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 6.2e-42 174.1 115 78.3
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 6.9e-41 170.6 115 77.4
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.2e-40 169.9 115 77.4
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.2e-40 169.9 115 77.4
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 4.5e-40 167.9 115 74.8
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 5.8e-40 167.5 115 75.7
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 3.8e-39 164.9 115 73.9
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 3.8e-39 164.9 115 73.9
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 4.9e-39 164.5 115 73.9
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 1.1e-38 163.3 115 80.9
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 1.9e-38 162.5 115 73.9
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 3.2e-38 161.8 116 74.1
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 7.1e-38 160.6 115 77.4
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 9.3e-38 160.2 116 73.3
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 1.2e-37 159.8 116 73.3
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.2e-37 159.8 116 73.3
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 1.2e-37 159.8 113 70.8
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.2e-37 159.8 115 76.5
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 1.6e-37 159.5 115 70.4
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 2.1e-37 159.1 115 78.3
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.3e-36 156.4 116 72.4
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 3.9e-36 154.8 115 75.7
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 3.9e-36 154.8 115 75.7
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 5.1e-36 154.5 115 72.2
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 6.7e-36 154.1 115 70.4
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 8.7e-36 153.7 115 76.5
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.5e-35 152.9 115 68.7
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 1.5e-35 152.9 115 71.3
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 1.5e-35 152.9 114 75.4
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 3.3e-35 151.8 115 72.2
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 4.3e-35 151.4 115 76.5
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 5.6e-35 151.0 115 67.8
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 5.6e-35 151.0 115 73.9
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 5.6e-35 151.0 115 72.2
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 7.4e-35 150.6 115 68.7
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 7.4e-35 150.6 115 69.6
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 7.4e-35 150.6 115 74.8
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 7.4e-35 150.6 115 72.2
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 7.4e-35 150.6 115 71.3
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 9.6e-35 150.2 116 70.7
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 9.6e-35 150.2 115 69.6
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 9.6e-35 150.2 115 69.6
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 9.6e-35 150.2 115 72.2
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 9.6e-35 150.2 111 70.3
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 9.6e-35 150.2 115 71.3
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 1.3e-34 149.8 116 70.7
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 1.6e-34 149.4 117 68.4
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 2.8e-34 148.7 115 66.1
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 3.7e-34 148.3 115 73.9
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 4.8e-34 147.9 115 73.9
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 8.1e-34 147.1 115 70.4
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 8.1e-34 147.1 113 74.3
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 2.4e-33 145.6 119 70.6
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 2.4e-33 145.6 115 73.0
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.4e-33 145.6 115 72.2
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 3.1e-33 145.2 115 73.0
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 4.0e-33 144.8 112 69.6
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 4.0e-33 144.8 115 73.9
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 5.3e-33 144.4 115 72.2
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 1.5e-32 142.9 115 69.6
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 2.0e-32 142.5 115 68.7
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 3.4e-32 141.7 115 70.4
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 4.5e-32 141.4 115 70.4
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 5.8e-32 141.0 115 69.6
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 1.3e-31 139.8 115 68.7
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 2.2e-31 139.0 115 67.8
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 4.9e-31 137.9 115 68.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 1.4e-30 136.3 112 65.2
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 1.4e-30 136.3 115 68.7
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 2.5e-30 135.6 115 67.8
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.2e-30 134.8 116 66.4
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 5.5e-30 134.4 115 68.7
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 1.6e-29 132.9 112 67.9
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 4.6e-29 131.3 115 66.1
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 4.6e-29 131.3 115 67.8
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 1.0e-28 130.2 115 66.1
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 1.3e-28 129.8 115 66.1
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 1.8e-28 129.4 115 67.0
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 3.0e-28 128.6 103 73.8
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 3.9e-28 128.3 115 65.2
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 3.9e-28 128.3 115 66.1
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 8.7e-28 127.1 115 65.2
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 8.7e-28 127.1 115 66.1
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.1e-27 126.7 115 64.3
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.9e-27 125.9 115 62.6
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 2.5e-27 125.6 115 62.6
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 2.5e-27 125.6 115 64.3
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 4.3e-27 124.8 115 61.7
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 4.8e-26 121.3 131 53.4
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 6.9e-25 117.5 77 72.7
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 6.9e-25 117.5 91 69.2
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.9e-22 109.4 116 48.3
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.2e-22 108.2 100 62.0
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 1.0e-20 103.6 113 46.0
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 1.3e-20 103.2 108 42.6
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 1.3e-20 103.2 84 66.7
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 8.7e-20 100.5 70 72.9
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 1.5e-19 99.8 90 66.7
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 1.9e-19 99.4 113 54.0
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 5.7e-19 97.8 119 52.9
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 9.7e-19 97.1 99 57.6
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 9.7e-19 97.1 114 43.0
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 1.3e-18 96.7 90 64.4
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.3e-18 94.4 115 46.1
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 3.1e-17 92.0 90 55.6
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 1.5e-16 89.7 105 52.4
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 5.0e-15 84.7 90 57.8
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 7.9e-13 77.4 56 64.3
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 3.0e-12 75.5 42 85.7
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 2.2e-10 69.3 64 56.2
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.4e-09 65.9 114 41.2
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 1.3e-07 60.1 52 61.5
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 4.2e-06 55.1 52 63.5
PRCOL_00001928 Prasinoderma coloniale HOM05D006738 ORTHO05D008191 5.5e-06 54.7 66 34.8


User provided reference genes

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