Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A729T35 Lonicera japonica HOM05D001145 ORTHO05D001415 1.7e-14 81.3 36 100.0
ClCG03G014420 Citrullus lanatus HOM05D001145 ORTHO05D001415 6.3e-09 62.8 34 82.4
MELO3C015592.2 Cucumis melo HOM05D001145 ORTHO05D001415 1.8e-08 61.2 33 78.8
Sed0005522 Sechium edule HOM05D001145 ORTHO05D001415 5.4e-08 59.7 33 78.8
CiPaw.14G135400 Carya illinoinensis HOM05D001145 ORTHO05D001415 7.0e-08 59.3 33 78.8
CiPaw.14G135500 Carya illinoinensis HOM05D001145 ORTHO05D001415 7.0e-08 59.3 33 78.8
Rhsim01G0184700 Rhododendron simsii HOM05D001145 ORTHO05D001415 9.1e-08 58.9 34 76.5
EL10Ac4g10372 Beta vulgaris HOM05D001145 ORTHO05D001415 1.6e-07 58.2 30 80.0
CANSAT11G2536 Cannabis sativa HOM05D001145 ORTHO05D001415 1.6e-07 58.2 33 72.7
FAN16G0444 Fragaria x ananassa HOM05D001145 ORTHO05D001415 1.6e-07 58.2 33 72.7
FAN21G1808 Fragaria x ananassa HOM05D001145 ORTHO05D001415 1.6e-07 58.2 33 72.7
Ca_17945_v3 Cicer arietinum L. HOM05D001145 ORTHO05D001415 2.0e-07 57.8 30 76.7
FAN11G3213 Fragaria x ananassa HOM05D001145 ORTHO05D001415 2.0e-07 57.8 30 76.7
FAN25G3342 Fragaria x ananassa HOM05D001145 ORTHO05D001415 2.0e-07 57.8 30 76.7
CsaV3_1G041780 Cucumis sativus L. HOM05D001145 ORTHO05D001415 2.7e-07 57.4 33 78.8
Glyma.05G156300 Glycine max HOM05D001145 ORTHO05D001415 2.7e-07 57.4 31 77.4
TAR633G2538 Trochodendron aralioides HOM05D001145 ORTHO05D001415 2.7e-07 57.4 34 73.5
HanXRQChr14g0437781 Helianthus annuus HOM05D001145 ORTHO05D001415 3.5e-07 57.0 31 74.2
CsaV3_1G041770 Cucumis sativus L. HOM05D001145 ORTHO05D001415 4.5e-07 56.6 33 69.7
Medtr8g085820 Medicago truncatula HOM05D001145 ORTHO05D001415 4.5e-07 56.6 31 74.2
HanXRQChr14g0437821 Helianthus annuus HOM05D001145 ORTHO05D001415 5.9e-07 56.2 31 74.2
Aqoxy2G00543_Aqoxy2G00544 Aquilegia oxysepala HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 72.7
AT4G25650 Arabidopsis thaliana HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 66.7
Carub.0007s1532 Capsella rubella HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 66.7
CARHR233090 Cardamine hirsuta HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 66.7
FvH4_3g45360 Fragaria vesca HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 72.7
FAN16G3718 Fragaria x ananassa HOM05D000521 ORTHO05D001415 7.7e-07 55.8 33 72.7
FAN21G2572 Fragaria x ananassa HOM05D000521 ORTHO05D001415 7.7e-07 55.8 33 72.7
MD11G1008100 Malus domestica HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 72.7
Medtr8g085840 Medicago truncatula HOM05D001145 ORTHO05D001415 7.7e-07 55.8 28 78.6
Psat7g072080 Pisum sativum HOM05D001145 ORTHO05D001415 7.7e-07 55.8 28 78.6
Prupe.6G005300 Prunus persica HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 72.7
RcHm_v2.0_Chr5g0083181 Rosa chinensis HOM05D001145 ORTHO05D001415 7.7e-07 55.8 33 72.7
FAN25G1442 Fragaria x ananassa HOM05D000521 ORTHO05D001415 1.0e-06 55.5 30 76.7
Glyma.08G114400 Glycine max HOM05D001145 ORTHO05D001415 1.0e-06 55.5 28 78.6
Gohir.D08G021250 Gossypium hirsutum HOM05D001145 ORTHO05D001415 1.0e-06 55.5 31 71.0
Gorai.004G016200 Gossypium raimondii HOM05D001145 ORTHO05D001415 1.0e-06 55.5 31 71.0
HanXRQChr14g0437811 Helianthus annuus HOM05D001145 ORTHO05D001415 1.0e-06 55.5 31 67.7
MD11G1008200 Malus domestica HOM05D001145 ORTHO05D001415 1.0e-06 55.5 33 72.7
TWI60G0780 Tripterygium wilfordii HOM05D001145 ORTHO05D001415 1.0e-06 55.5 33 69.7
VMungo0251G0475 Vigna mungo HOM05D001145 ORTHO05D001415 1.0e-06 55.5 31 74.2
HanXRQChr06g0179321 Helianthus annuus HOM05D001145 ORTHO05D001415 1.3e-06 55.1 28 82.1
HanXRQChr14g0435311 Helianthus annuus HOM05D001145 ORTHO05D001415 1.3e-06 55.1 31 71.0
Phvul.002G236700 Phaseolus vulgaris HOM05D001145 ORTHO05D001415 1.3e-06 55.1 31 74.2
RcHm_v2.0_Chr5g0083211 Rosa chinensis HOM05D001145 ORTHO05D001415 1.3e-06 55.1 33 69.7
THA.LOC104811071 Tarenaya hassleriana HOM05D001145 ORTHO05D001415 1.3e-06 55.1 33 66.7
ECA238G3584 Erigeron canadensis HOM05D001145 ORTHO05D001415 1.7e-06 54.7 31 71.0
Potri.001G005700 Populus trichocarpa HOM05D001145 ORTHO05D001415 1.7e-06 54.7 31 77.4
PGR119G0075 Punica granatum HOM05D001145 ORTHO05D001415 1.7e-06 54.7 33 69.7
Ah.04g161530 Amaranthus hybridus HOM05D001145 ORTHO05D001415 2.2e-06 54.3 30 76.7
Cpa.g.sc119.60 Carica papaya HOM05D001145 ORTHO05D001415 2.2e-06 54.3 33 63.6
AUR62019174 Chenopodium quinoa HOM05D001145 ORTHO05D001415 2.2e-06 54.3 28 75.0
ECA238G4704 Erigeron canadensis HOM05D001145 ORTHO05D001415 2.2e-06 54.3 31 77.4
Atru.chr4.1730 Acer truncatum HOM05D001145 ORTHO05D001415 2.9e-06 53.9 31 71.0
CANSAT11G1678 Cannabis sativa HOM05D001145 ORTHO05D001415 2.9e-06 53.9 33 66.7
Lalb_Chr13g0295041 Lupinus albus HOM05D001145 ORTHO05D001415 2.9e-06 53.9 30 70.0
Potri.003G219000 Populus trichocarpa HOM05D001145 ORTHO05D001415 2.9e-06 53.9 33 66.7
DCAR_029866 Daucus carota HOM05D001145 ORTHO05D001415 3.8e-06 53.5 24 91.7
Hma1.2p1_0843F.1_g227360 Hydrangea macrophylla HOM05D001145 ORTHO05D001415 3.8e-06 53.5 33 69.7
Sabra03G0163400 Salix brachista HOM05D001145 ORTHO05D001415 3.8e-06 53.5 31 64.5
Ah.04g149610 Amaranthus hybridus HOM05D001145 ORTHO05D001415 5.0e-06 53.1 28 75.0
Cc01_g00730 Coffea canephora HOM05D001145 ORTHO05D001415 5.0e-06 53.1 34 67.6
RcHm_v2.0_Chr1g0321981 Rosa chinensis HOM05D001145 ORTHO05D001415 5.0e-06 53.1 33 66.7
Thecc.09G208200 Theobroma cacao HOM05D001145 ORTHO05D001415 5.0e-06 53.1 31 74.2
GSVIVG01025446001 Vitis vinifera HOM05D001145 ORTHO05D001415 5.0e-06 53.1 33 69.7
AL7G27430 Arabidopsis lyrata HOM05D001145 ORTHO05D001415 6.5e-06 52.8 33 63.6
Lj4g0005676 Lotus japonicus HOM05D001145 ORTHO05D001415 6.5e-06 52.8 28 75.0
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 6.5e-06 52.8 28 75.0
Manes.15G107700 Manihot esculenta HOM05D001145 ORTHO05D001415 6.5e-06 52.8 33 63.6
Sabra01G0004100 Salix brachista HOM05D001145 ORTHO05D001415 6.5e-06 52.8 31 71.0
Sabra01G0004200 Salix brachista HOM05D001145 ORTHO05D001415 6.5e-06 52.8 31 71.0
Aa31LG6G8060 Aethionema arabicum HOM05D001145 ORTHO05D001415 8.5e-06 52.4 33 63.6
arahy.Tifrunner.gnm1.ann1.KD1GVP Arachis hypogaea HOM05D001145 ORTHO05D001415 8.5e-06 52.4 27 81.5
A01p16910 Brassica napus HOM05D001145 ORTHO05D001415 8.5e-06 52.4 33 63.6
C01p21190 Brassica napus HOM05D001145 ORTHO05D001415 8.5e-06 52.4 33 63.6
Ciclev10014840m.g Citrus clementina HOM05D001145 ORTHO05D001415 8.5e-06 52.4 31 71.0
Duzib168G0121 Durio zibethinus HOM05D001145 ORTHO05D001415 8.5e-06 52.4 31 71.0
ECA238G3460 Erigeron canadensis HOM05D001145 ORTHO05D001415 8.5e-06 52.4 27 74.1
Thhalv10024869m.g Eutrema salsugineum HOM05D001145 ORTHO05D001415 8.5e-06 52.4 33 63.6
Sp7g23690 Schrenkiella parvula HOM05D001145 ORTHO05D001415 8.5e-06 52.4 33 63.6


User provided reference genes

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