Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.2e-104 383.3 203 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.7e-88 328.9 203 85.2
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 5.4e-81 304.7 203 82.3
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 7.0e-81 304.3 203 80.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 6.6e-79 297.7 205 78.0
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 1.5e-78 296.6 203 78.8
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.9e-78 296.2 203 80.8
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.5e-78 295.8 205 77.6
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.3e-78 295.0 204 77.5
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 5.6e-78 294.7 205 80.5
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 6.2e-77 291.2 204 78.9
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 4.0e-76 288.5 207 76.3
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 6.8e-76 287.7 203 76.8
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.6e-75 285.8 205 78.0
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.4e-75 285.0 208 77.9
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 7.5e-75 284.3 204 75.5
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 7.5e-75 284.3 204 76.5
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 7.5e-75 284.3 204 76.5
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 9.8e-75 283.9 203 75.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 2.9e-74 282.3 204 76.0
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 3.7e-74 282.0 203 72.9
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 3.7e-74 282.0 208 76.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.9e-74 281.6 203 75.9
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 6.4e-74 281.2 203 76.4
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 6.4e-74 281.2 209 75.6
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.9e-73 279.6 203 74.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 3.2e-73 278.9 212 75.5
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 9.2e-73 277.3 203 72.4
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 9.2e-73 277.3 204 75.0
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.6e-72 275.0 196 75.0
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 7.8e-72 274.2 220 70.0
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 7.8e-72 274.2 202 73.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.0e-71 273.9 205 76.1
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.3e-71 273.5 204 74.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.7e-71 273.1 204 73.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 1.7e-71 273.1 205 73.7
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.3e-71 272.7 203 75.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-71 271.9 180 81.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-71 271.9 180 81.1
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.9e-71 271.9 203 71.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 5.1e-71 271.6 204 73.0
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 6.6e-71 271.2 203 73.4
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 6.6e-71 271.2 203 72.4
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.6e-71 271.2 207 73.4
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 8.6e-71 270.8 204 73.0
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 8.6e-71 270.8 203 74.9
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 8.6e-71 270.8 204 74.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 1.1e-70 270.4 207 72.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.1e-70 270.4 207 72.9
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.3e-70 268.5 236 65.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.6e-70 268.1 207 72.0
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 5.6e-70 268.1 210 71.4
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.3e-70 267.7 201 71.6
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 9.5e-70 267.3 202 71.8
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.6e-69 265.4 187 74.9
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 7.6e-67 257.7 149 87.9
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 9.9e-67 257.3 181 75.7
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.3e-66 256.9 145 87.6
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.7e-66 256.5 189 71.4
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.2e-66 256.1 209 67.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 2.2e-66 256.1 205 69.3
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.2e-66 256.1 183 74.9
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 4.9e-66 255.0 149 86.6
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 6.4e-66 254.6 173 76.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.9e-65 253.1 248 59.3
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 7.1e-65 251.1 149 82.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.6e-64 250.0 149 83.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 2.1e-64 249.6 211 67.3
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.5e-64 248.8 208 65.9
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 7.8e-64 247.7 206 65.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 7.8e-64 247.7 196 70.9
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.0e-63 247.3 150 85.3
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-63 246.9 149 83.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 159 76.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-63 246.5 213 65.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 2.3e-63 246.1 171 77.2
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 3.0e-63 245.7 150 85.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 3.0e-63 245.7 150 80.7
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.9e-63 245.4 151 81.5
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 8.6e-63 244.2 205 66.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-62 243.8 151 83.4
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-61 240.4 149 81.2
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.6e-61 240.0 152 80.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.6e-61 240.0 174 74.1
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.6e-61 240.0 174 74.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 3.6e-61 238.8 175 74.3
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.6e-61 238.8 207 66.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 4.7e-61 238.4 214 64.0
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 6.2e-61 238.0 240 59.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 8.1e-61 237.7 151 77.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.1e-60 237.3 149 79.9
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.4e-60 236.9 213 63.8
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.4e-60 236.9 145 80.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.8e-60 236.5 141 85.8
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-60 236.5 151 82.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.1e-60 235.7 151 78.1
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 5.2e-60 235.0 216 62.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 5.2e-60 235.0 202 66.3
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-59 233.8 186 67.2
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 9.9e-59 230.7 189 67.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 9.9e-59 230.7 204 67.6
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.7e-58 229.9 215 62.3
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.7e-58 229.9 183 69.4
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-58 229.9 205 67.3
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.2e-58 229.6 204 67.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.9e-58 229.2 149 79.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 3.8e-58 228.8 182 65.9
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.8e-58 228.8 149 78.5
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 6.4e-58 228.0 156 74.4
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-57 226.9 205 66.3
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.4e-57 226.1 145 77.2
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.4e-57 226.1 148 75.7
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 7.1e-57 224.6 156 73.1
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-56 223.8 185 65.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.7e-56 222.6 206 63.6
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.3e-55 220.3 206 59.7
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.7e-55 219.9 226 59.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 8.7e-55 217.6 221 62.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 8.7e-55 217.6 221 62.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-54 217.2 203 63.5
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.3e-54 215.7 161 70.2
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.8e-53 211.8 169 68.0
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 8.1e-53 211.1 181 65.2
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 8.1e-53 211.1 173 63.6
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.4e-52 210.3 157 73.9
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.4e-52 209.5 179 64.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.1e-52 209.1 197 63.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 6.9e-52 208.0 221 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.2e-51 207.2 148 66.2
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.4e-51 205.3 123 86.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.3e-50 203.8 201 59.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 4.9e-50 201.8 148 70.9
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 3.2e-49 199.1 139 74.1
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.2e-49 198.7 207 55.1
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 2.3e-47 193.0 123 79.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 3.9e-47 192.2 150 72.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 5.1e-47 191.8 162 65.4
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 5.1e-47 191.8 145 66.2
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.3e-46 189.1 188 56.4
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 3.3e-46 189.1 143 72.0
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 3.6e-45 185.7 193 51.3
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 8.1e-45 184.5 150 62.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-44 183.7 112 83.9
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.4e-44 183.0 146 68.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.0e-44 182.2 150 61.3
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 7.6e-43 177.9 106 84.0
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-39 166.8 165 59.4
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 8.7e-39 164.5 117 75.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 7.4e-38 161.4 93 88.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 7.6e-35 151.4 90 85.6
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.7e-34 150.2 136 64.0
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 5.1e-31 138.7 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 3.7e-29 132.5 132 58.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 5.0e-26 122.1 150 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.9e-20 101.7 96 52.1
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 9.0e-20 101.3 85 65.9
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.4e-17 94.0 140 37.1
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 4.2e-17 92.4 183 31.7
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 5.7e-14 82.0 77 58.4
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 3.2e-09 66.2 88 47.7
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 4.2e-09 65.9 184 29.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.5e-09 65.5 68 55.9
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 4.7e-08 62.4 103 42.7
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 8.8e-07 58.2 78 52.6


User provided reference genes

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