Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 1.5e-49 199.1 94 100.0
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.8e-40 168.3 90 87.8
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 6.2e-40 167.2 93 83.9
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 8.1e-40 166.8 93 83.9
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 8.1e-40 166.8 90 84.4
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 1.1e-39 166.4 93 83.9
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 1.8e-39 165.6 90 86.7
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.8e-39 165.6 90 86.7
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 2.4e-39 165.2 91 82.4
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 2.4e-39 165.2 91 84.6
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 5.3e-39 164.1 90 85.6
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 5.3e-39 164.1 91 81.3
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 5.3e-39 164.1 90 85.6
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 1.5e-38 162.5 90 83.3
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 4.5e-38 161.0 91 81.3
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 5.8e-38 160.6 90 84.4
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 7.6e-38 160.2 94 79.8
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 1.7e-37 159.1 90 80.0
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 2.2e-37 158.7 90 83.3
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 2.9e-37 158.3 90 81.1
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 2.9e-37 158.3 90 76.7
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 4.9e-37 157.5 93 73.1
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 4.9e-37 157.5 93 73.1
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 4.9e-37 157.5 90 81.1
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 4.9e-37 157.5 90 81.1
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 4.9e-37 157.5 90 81.1
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 4.9e-37 157.5 93 80.6
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 6.4e-37 157.1 90 80.0
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 6.4e-37 157.1 91 79.1
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 6.4e-37 157.1 91 79.1
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 8.4e-37 156.8 93 77.4
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 8.4e-37 156.8 92 77.2
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 1.4e-36 156.0 91 81.3
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.4e-36 156.0 91 78.0
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 1.9e-36 155.6 91 78.0
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 2.4e-36 155.2 90 80.0
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 3.2e-36 154.8 91 79.1
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 3.2e-36 154.8 91 79.1
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 3.2e-36 154.8 93 72.0
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 3.2e-36 154.8 90 81.1
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 4.2e-36 154.5 90 77.8
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 7.1e-36 153.7 91 78.0
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 9.3e-36 153.3 90 78.9
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 9.3e-36 153.3 90 74.4
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 9.3e-36 153.3 90 78.9
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 1.2e-35 152.9 93 77.4
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 1.2e-35 152.9 90 78.9
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 1.6e-35 152.5 90 77.8
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 1.6e-35 152.5 90 78.9
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 1.6e-35 152.5 91 75.8
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 2.1e-35 152.1 91 78.0
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 2.1e-35 152.1 91 78.0
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.7e-35 151.8 91 76.9
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.7e-35 151.8 91 78.0
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 3.5e-35 151.4 91 76.9
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 3.5e-35 151.4 90 80.0
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 4.6e-35 151.0 91 78.0
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 4.6e-35 151.0 90 78.9
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.6e-35 151.0 90 76.7
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 7.9e-35 150.2 90 77.8
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 7.9e-35 150.2 90 78.9
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 1.3e-34 149.4 90 75.6
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.8e-34 149.1 93 75.3
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 3.0e-34 148.3 93 74.2
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 3.9e-34 147.9 90 74.4
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.9e-34 147.9 90 78.9
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.1e-33 146.4 90 76.7
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.1e-33 146.4 90 74.4
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.1e-33 146.4 90 76.7
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.5e-33 146.0 90 74.4
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.9e-33 145.6 106 65.1
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 4.3e-33 144.4 90 74.4
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 4.3e-33 144.4 89 73.0
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 5.6e-33 144.1 90 74.4
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 5.6e-33 144.1 90 72.2
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 9.6e-33 143.3 90 73.3
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 1.3e-32 142.9 90 74.4
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 1.3e-32 142.9 90 75.6
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 1.3e-32 142.9 92 75.0
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 1.6e-32 142.5 90 73.3
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.1e-32 142.1 90 72.2
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 2.1e-32 142.1 90 72.2
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 2.8e-32 141.7 90 72.2
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 2.8e-32 141.7 90 68.9
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 3.7e-32 141.4 89 70.8
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 6.2e-32 140.6 90 73.3
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 1.1e-31 139.8 91 68.1
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 1.1e-31 139.8 91 68.1
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 1.4e-31 139.4 90 72.2
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 4.0e-31 137.9 93 68.8
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 6.9e-31 137.1 126 57.1
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 1.5e-30 136.0 91 74.7
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.4e-28 129.4 70 87.1
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 7.1e-28 127.1 89 66.3
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.6e-24 115.9 86 59.3
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.0e-21 106.7 91 58.2
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 4.6e-19 97.8 90 47.8
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.3e-17 91.7 90 56.7
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 2.8e-16 88.6 46 84.8
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.8e-16 88.6 44 90.9
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 6.3e-16 87.4 47 85.1
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 5.9e-14 80.9 46 82.6
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 4.6e-11 71.2 44 68.2
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 2.0e-09 65.9 42 73.8


User provided reference genes

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