Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 3.4e-89 331.6 170 100.0
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 5.4e-66 254.6 177 76.8
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 2.7e-65 252.3 174 74.7
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 1.3e-64 250.0 174 74.1
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.7e-64 249.6 170 74.1
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.9e-64 248.8 178 75.8
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 5.0e-64 248.1 176 76.1
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 6.5e-64 247.7 177 74.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 6.5e-64 247.7 177 74.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.1e-63 246.9 175 75.4
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.5e-63 245.7 176 75.6
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 3.2e-63 245.4 173 75.7
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 7.2e-63 244.2 173 75.1
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 7.2e-63 244.2 176 75.0
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 9.5e-63 243.8 174 71.8
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.1e-62 242.7 173 74.6
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.1e-62 242.7 170 71.2
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.7e-62 242.3 175 72.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.6e-62 241.9 174 72.4
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.8e-61 239.6 177 71.2
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 2.3e-61 239.2 171 71.9
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 2.3e-61 239.2 177 71.8
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 2.3e-61 239.2 175 72.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.3e-61 239.2 173 74.0
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 5.2e-61 238.0 170 72.9
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 5.2e-61 238.0 171 71.9
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 8.8e-61 237.3 183 72.1
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 1.5e-60 236.5 174 73.0
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.0e-60 236.1 174 73.0
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 2.0e-60 236.1 176 73.3
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.0e-60 236.1 177 72.9
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 3.4e-60 235.3 173 72.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 7.5e-60 234.2 175 70.9
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.3e-59 233.4 172 72.7
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.7e-59 233.0 174 73.0
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 2.2e-59 232.6 175 71.4
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 2.8e-59 232.3 175 70.3
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 4.9e-59 231.5 174 70.1
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 6.3e-59 231.1 172 70.9
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 6.3e-59 231.1 174 73.0
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.1e-58 230.3 177 71.2
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.4e-58 229.9 176 71.6
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.8e-58 229.6 174 69.5
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.1e-58 228.4 177 70.1
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 5.4e-58 228.0 172 70.3
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 5.4e-58 228.0 172 70.3
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 5.4e-58 228.0 170 71.8
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.2e-57 226.9 171 70.2
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.2e-57 226.9 175 68.6
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.6e-57 226.5 178 70.8
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.6e-57 226.5 178 70.8
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.6e-57 226.5 171 70.8
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.0e-57 226.1 171 73.1
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.0e-57 226.1 177 69.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.9e-57 224.6 177 68.9
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 7.7e-57 224.2 171 70.2
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 7.7e-57 224.2 173 70.5
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 7.7e-57 224.2 171 72.5
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.0e-56 223.8 173 68.8
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.0e-56 223.8 172 69.2
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-56 223.4 170 68.8
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.3e-56 223.4 175 68.6
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 1.3e-56 223.4 175 67.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.3e-56 223.4 175 70.3
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.3e-56 222.6 173 69.4
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 2.9e-56 222.2 170 69.4
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.8e-56 221.9 173 68.8
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.8e-56 221.9 171 69.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 3.8e-56 221.9 172 68.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 3.8e-56 221.9 174 67.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 6.6e-56 221.1 173 68.2
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 6.6e-56 221.1 172 68.6
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 6.6e-56 221.1 174 70.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 8.6e-56 220.7 172 68.0
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 8.6e-56 220.7 171 67.8
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 8.6e-56 220.7 171 67.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 8.6e-56 220.7 171 71.9
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-55 219.9 171 69.0
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-55 219.9 171 69.0
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.5e-55 219.9 178 70.2
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.9e-55 219.5 177 70.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 2.5e-55 219.2 171 69.0
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.5e-55 219.2 175 68.0
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.5e-55 219.2 149 73.8
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.5e-55 219.2 175 68.0
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 5.6e-55 218.0 175 69.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 9.5e-55 217.2 172 68.0
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 9.5e-55 217.2 181 65.2
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 67.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.6e-54 216.5 172 67.4
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.1e-54 216.1 177 68.4
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 3.6e-54 215.3 184 65.8
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 4.7e-54 214.9 175 67.4
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.4e-53 213.4 169 65.7
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.8e-53 213.0 175 68.0
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.3e-53 212.6 173 68.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 5.2e-53 211.5 176 66.5
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 8.9e-53 210.7 171 69.0
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.5e-52 209.9 172 68.6
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.5e-52 209.9 172 68.6
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.5e-52 209.9 169 65.1
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.2e-51 206.1 170 67.6
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.2e-51 206.1 180 66.7
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 8.3e-51 204.1 178 63.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 3.2e-50 202.2 172 68.0
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 5.4e-50 201.4 176 64.2
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 9.2e-50 200.7 177 64.4
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 3.5e-49 198.7 175 63.4
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.0e-48 197.2 180 63.3
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 3.0e-48 195.7 148 69.6
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 3.9e-48 195.3 173 62.4
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.5e-47 193.4 170 60.0
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.9e-47 193.0 167 61.7
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 9.5e-47 190.7 110 84.5
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.2e-46 190.3 170 59.4
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 8.0e-46 187.6 170 61.8
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 8.0e-46 187.6 170 61.8
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.4e-45 186.8 127 73.2
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 8.3e-43 177.6 146 69.9
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.3e-40 170.2 141 58.9
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 3.9e-40 168.7 146 68.5
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 6.6e-40 167.9 148 67.6
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-39 166.8 142 66.2
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.8e-37 159.8 142 64.1
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.1e-37 159.1 142 66.2
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.3e-32 143.7 82 76.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 6.2e-30 134.8 129 63.6
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 3.4e-28 129.0 124 56.5
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 5.8e-28 128.3 170 50.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-26 122.1 74 77.0
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 9.2e-26 120.9 74 75.7
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 1.2e-25 120.6 72 77.8
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.1e-25 119.8 74 75.7
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 9.6e-23 110.9 105 52.4
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 4.0e-21 105.5 107 56.1
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 6.9e-21 104.8 103 59.2
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 4.9e-19 98.6 114 57.9
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 6.4e-19 98.2 95 60.0
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.4e-18 96.3 111 57.7
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-17 94.0 74 60.8
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-15 87.4 99 57.6
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 3.6e-14 82.4 85 49.4
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 2.4e-13 79.7 65 58.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.3e-11 73.9 104 42.3
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.4e-10 69.7 111 47.7
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 4.3e-07 58.9 30 80.0


User provided reference genes

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