Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 4.1e-232 807.7 421 100.0
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 4.2e-128 462.2 398 65.3
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.3e-126 456.4 397 64.5
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 9.7e-125 451.1 397 63.0
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 4.5e-122 442.2 400 62.5
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 5.5e-120 435.3 397 61.5
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 4.6e-119 432.2 397 61.2
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.0e-118 429.5 397 60.2
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.1e-118 428.7 397 60.5
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 6.7e-118 428.3 397 60.5
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 2.5e-117 426.4 397 61.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.3e-117 426.0 397 60.2
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 9.7e-117 424.5 396 60.9
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.3e-116 424.1 397 61.5
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 1.7e-116 423.7 395 60.5
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.1e-115 419.5 397 58.4
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.2e-114 417.5 401 60.1
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.5e-114 417.2 397 59.7
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.4e-114 416.0 396 59.6
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-113 413.3 397 59.7
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 2.2e-113 413.3 399 60.7
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.8e-113 412.5 397 60.2
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 5.0e-113 412.1 397 58.9
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.5e-113 411.8 392 60.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.1e-112 411.0 387 61.5
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.1e-112 411.0 401 58.6
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 3.2e-112 409.5 393 59.8
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.2e-112 409.5 403 58.8
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 5.5e-112 408.7 398 61.1
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 7.2e-112 408.3 398 58.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.2e-111 407.5 387 61.0
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.2e-111 407.5 397 59.2
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.6e-111 407.1 404 57.4
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.7e-111 406.4 397 58.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 4.7e-111 405.6 398 57.8
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 6.1e-111 405.2 397 58.7
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.9e-110 402.5 407 59.0
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.0e-109 400.2 412 57.0
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.7e-109 398.7 398 58.5
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 7.4e-109 398.3 390 57.4
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-108 397.5 390 58.5
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 2.8e-108 396.4 397 57.2
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.7e-108 396.0 397 57.2
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.8e-108 395.6 398 58.0
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.1e-107 394.4 398 57.5
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.1e-107 392.5 398 57.8
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 6.9e-107 391.7 397 56.4
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 1.5e-106 390.6 420 56.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 4.5e-106 389.0 400 57.0
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 4.5e-106 389.0 399 57.4
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 1.0e-105 387.9 402 58.0
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 5.0e-105 385.6 395 56.7
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 5.0e-105 385.6 397 55.9
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 6.5e-105 385.2 397 55.9
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 8.5e-105 384.8 397 56.4
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.1e-104 384.4 394 56.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.4e-104 384.0 397 56.2
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 3.2e-104 382.9 395 56.7
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 5.5e-104 382.1 394 56.3
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.4e-104 381.3 410 54.4
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 9.4e-104 381.3 399 56.4
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.6e-103 380.6 406 54.4
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.6e-103 379.4 398 57.0
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 3.6e-103 379.4 405 56.5
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 3.6e-103 379.4 397 55.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 6.1e-103 378.6 395 56.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.0e-102 377.9 398 57.0
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.3e-102 376.7 398 56.8
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.7e-102 375.2 397 56.2
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.1e-101 374.4 396 56.6
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 1.3e-100 370.9 398 55.5
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.2e-100 370.2 397 55.9
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.8e-100 369.8 397 55.7
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.3e-100 368.6 397 55.7
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.4e-99 366.7 399 55.6
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.1e-99 366.3 413 51.6
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.6e-98 363.2 399 51.4
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.7e-98 361.7 396 54.3
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 7.7e-98 361.7 397 54.9
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.9e-97 359.8 397 54.4
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.8e-97 359.4 394 55.1
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 6.5e-97 358.6 389 55.0
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 8.5e-97 358.2 401 55.1
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.1e-96 357.8 400 53.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 5.5e-96 355.5 394 52.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.2e-95 354.4 400 53.2
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.6e-95 352.8 388 55.2
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.1e-95 352.1 398 53.3
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 6.1e-95 352.1 399 54.1
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.8e-94 350.5 389 53.0
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 4.0e-94 349.4 383 54.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.5e-93 345.1 393 52.9
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 2.2e-92 343.6 394 52.5
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 3.7e-92 342.8 387 53.0
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 3.7e-92 342.8 394 53.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.1e-91 341.3 394 54.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.1e-91 341.3 392 54.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 2.4e-91 340.1 387 53.2
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 4.1e-91 339.3 392 52.3
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 5.3e-91 339.0 393 53.2
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 7.0e-91 338.6 388 53.1
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.6e-90 337.4 389 51.9
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.7e-90 336.7 394 54.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.7e-90 336.7 397 48.4
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 7.7e-90 335.1 398 52.5
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.0e-89 334.7 398 52.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.3e-89 334.3 402 51.0
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.5e-89 332.0 398 48.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.5e-88 330.1 375 53.1
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 5.5e-88 328.9 399 48.9
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 3.6e-87 326.2 392 51.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.6e-87 326.2 307 59.6
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.0e-86 324.7 391 52.4
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.0e-86 324.7 385 53.2
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.0e-86 324.7 398 50.3
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.3e-86 323.6 400 46.5
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.3e-86 323.6 403 50.9
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.0e-86 323.2 385 53.5
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 8.8e-86 321.6 393 48.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 1.2e-85 321.2 387 52.5
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 1.2e-85 321.2 387 52.5
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.2e-85 321.2 387 51.7
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-83 314.3 388 54.6
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.1e-83 313.2 251 69.7
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 4.1e-83 312.8 385 55.6
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.4e-83 312.4 398 46.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 5.4e-83 312.4 332 54.2
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 2.9e-81 306.6 392 50.0
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.8e-81 306.2 388 48.7
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.8e-81 306.2 392 50.0
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 5.0e-81 305.8 391 50.6
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 6.6e-81 305.4 397 49.4
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-80 304.7 394 49.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.5e-80 304.3 394 49.7
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.9e-80 303.9 396 49.5
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.2e-80 302.8 243 68.7
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 7.2e-80 302.0 373 50.1
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 7.2e-80 302.0 373 50.1
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 7.2e-80 302.0 253 68.4
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.8e-78 297.4 398 47.0
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.2e-77 294.7 398 46.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 6.6e-65 252.3 202 70.3
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.2e-63 248.1 386 44.6
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 8.0e-63 245.4 296 49.3
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.2e-55 221.5 385 40.0
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.2e-46 189.5 390 36.9
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 5.6e-40 169.5 390 35.1
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 5.1e-33 146.4 148 58.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 7.3e-32 142.5 430 31.4
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.4e-27 126.3 274 35.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.1e-22 112.1 156 48.1
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.8e-17 94.7 217 31.3
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 5.1e-17 93.2 94 56.4
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.8e-14 84.7 55 74.5
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 8.7e-09 65.9 219 27.9
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.1e-08 65.5 42 81.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 4.3e-08 63.5 96 38.5
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.3e-07 62.0 186 29.6


User provided reference genes

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