Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 3.5e-82 308.1 144 100.0
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 4.1e-27 125.2 81 75.3
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 5.4e-27 124.8 71 83.1
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.2e-26 123.6 71 83.1
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 2.7e-26 122.5 71 80.3
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 2.7e-26 122.5 71 80.3
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 3.5e-26 122.1 71 80.3
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.0e-25 120.6 71 77.5
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 1.0e-25 120.6 71 80.3
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 1.3e-25 120.2 71 80.3
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.3e-25 120.2 71 81.7
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 1.3e-25 120.2 71 80.3
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.7e-25 119.8 71 77.5
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.7e-25 119.8 71 77.5
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.7e-25 119.8 71 77.5
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 1.7e-25 119.8 71 81.7
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.3e-25 119.4 71 78.9
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 2.3e-25 119.4 76 73.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 3.9e-25 118.6 71 77.5
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 3.9e-25 118.6 71 80.3
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 5.1e-25 118.2 71 74.6
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.1e-25 118.2 71 76.1
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 6.6e-25 117.9 71 76.1
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 6.6e-25 117.9 71 76.1
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 8.7e-25 117.5 71 74.6
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 77.5
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 80.3
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.1e-24 117.1 71 76.1
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.5e-24 116.7 71 76.1
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.5e-24 116.7 71 76.1
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.9e-24 116.3 71 73.2
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 1.9e-24 116.3 71 73.2
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 3.3e-24 115.5 71 74.6
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 4.3e-24 115.2 71 76.1
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 4.3e-24 115.2 71 76.1
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 4.3e-24 115.2 73 71.2
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 7.3e-24 114.4 71 76.1
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 7.3e-24 114.4 71 76.1
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 9.6e-24 114.0 69 76.8
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 9.6e-24 114.0 71 71.8
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 9.6e-24 114.0 71 71.8
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 9.6e-24 114.0 69 76.8
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 9.6e-24 114.0 71 73.2
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.2e-23 113.6 71 74.6
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.2e-23 113.6 71 77.5
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 1.6e-23 113.2 69 78.3
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.6e-23 113.2 69 76.8
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 1.6e-23 113.2 69 75.4
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.6e-23 113.2 70 74.3
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 2.1e-23 112.8 67 77.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 2.8e-23 112.5 69 76.8
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 2.8e-23 112.5 71 74.6
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 2.8e-23 112.5 71 74.6
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 3.6e-23 112.1 69 75.4
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 3.6e-23 112.1 69 75.4
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 3.6e-23 112.1 69 75.4
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 3.6e-23 112.1 69 75.4
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 3.6e-23 112.1 71 70.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 3.6e-23 112.1 69 75.4
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 3.6e-23 112.1 71 70.4
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.6e-23 112.1 70 74.3
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.6e-23 112.1 71 70.4
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 4.7e-23 111.7 71 71.8
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 4.7e-23 111.7 71 71.8
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 4.7e-23 111.7 71 74.6
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 6.2e-23 111.3 69 75.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 6.2e-23 111.3 69 75.4
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 6.2e-23 111.3 71 74.6
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 8.1e-23 110.9 69 72.5
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 8.1e-23 110.9 69 72.5
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 8.1e-23 110.9 69 72.5
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 8.1e-23 110.9 69 72.5
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.1e-22 110.5 69 75.4
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.4e-22 110.2 67 76.1
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.4e-22 110.2 71 76.1
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 1.2e-21 107.1 71 67.6
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.5e-21 106.7 71 67.6
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.5e-21 106.7 71 67.6
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.5e-21 106.7 69 68.1
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 2.6e-21 105.9 97 57.7
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 3.4e-21 105.5 71 66.2
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 4.4e-21 105.1 63 74.6
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 4.4e-21 105.1 63 74.6
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 4.4e-21 105.1 71 64.8
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 4.4e-21 105.1 71 67.6
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 4.4e-21 105.1 71 69.0
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 5.8e-21 104.8 71 64.8
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 7.6e-21 104.4 71 67.6
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 9.9e-21 104.0 71 67.6
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 9.9e-21 104.0 71 64.8
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 1.3e-20 103.6 71 66.2
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.3e-20 103.6 71 73.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.2e-20 102.8 68 67.6
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 2.9e-20 102.4 70 67.1
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 2.9e-20 102.4 71 66.2
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 3.8e-20 102.1 71 66.2
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 4.9e-20 101.7 71 63.4
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 6.4e-20 101.3 70 64.3
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 6.4e-20 101.3 71 64.8
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 8.4e-20 100.9 71 63.4
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.1e-19 100.5 71 69.0
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 4.2e-19 98.6 71 62.0
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 4.2e-19 98.6 63 68.3
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 5.4e-19 98.2 63 71.4
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 5.4e-19 98.2 72 58.3
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 5.4e-19 98.2 71 62.0
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 7.1e-19 97.8 67 68.7
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 9.3e-19 97.4 67 64.2
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 9.3e-19 97.4 67 64.2
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.6e-18 96.7 66 62.1
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 3.5e-18 95.5 117 45.3
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 3.5e-18 95.5 74 63.5
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 4.6e-18 95.1 67 64.2
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 4.6e-18 95.1 67 62.7
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 4.6e-18 95.1 67 67.2
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 4.6e-18 95.1 64 64.1
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.8e-18 94.4 63 66.7
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 1.0e-17 94.0 63 66.7
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 1.5e-16 90.1 55 72.7
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.8e-15 85.9 72 59.7
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 4.0e-14 82.0 53 71.7
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 5.3e-14 81.6 61 59.0
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.5e-13 80.1 66 53.0
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.5e-13 80.1 82 48.8
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 2.0e-13 79.7 61 57.4
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.8e-12 75.5 67 53.7
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 4.2e-11 72.0 48 66.7
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 5.4e-11 71.6 58 56.9
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 9.3e-11 70.9 67 50.7
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 5.1e-09 65.1 67 41.8
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.6e-08 61.6 55 43.6
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 2.8e-07 59.3 71 40.8
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.7e-07 58.9 50 50.0


User provided reference genes

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