Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A598G20 Lonicera japonica HOM05D000038 ORTHO05D028570 1.5e-40 169.1 87 100.0
Lj2C594T7 Lonicera japonica HOM05D000038 ORTHO05D000143 3.4e-16 88.2 65 72.3
Lj2A596T42 Lonicera japonica HOM05D000038 ORTHO05D000143 2.9e-15 85.1 64 75.0
Lj2A595G18 Lonicera japonica HOM05D000038 ORTHO05D000143 1.4e-14 82.8 64 70.3
Lj2C599G1 Lonicera japonica HOM05D000038 ORTHO05D000143 4.2e-14 81.3 59 74.6
MSTRG.23430 Avicennia marina HOM05D000038 ORTHO05D000143 2.7e-13 78.6 64 64.1
GSVIVG01026549001 Vitis vinifera HOM05D000038 ORTHO05D000143 3.5e-13 78.2 60 66.7
Lj2C600T3 Lonicera japonica HOM05D000038 ORTHO05D000143 1.0e-12 76.6 59 74.6
MSTRG.23432 Avicennia marina HOM05D000038 ORTHO05D000143 1.3e-12 76.3 64 64.1
MSTRG.23427 Avicennia marina HOM05D000038 ORTHO05D000143 3.9e-12 74.7 64 60.9
Dinv05703 Davidia involucrata HOM05D000038 ORTHO05D000143 5.1e-12 74.3 65 63.1
Manes.13G071300 Manihot esculenta HOM05D000038 ORTHO05D000143 5.1e-12 74.3 64 59.4
Cfa002839 Carpinus fangiana HOM05D000038 ORTHO05D000143 6.6e-12 73.9 64 59.4
Duzib187G1882 Durio zibethinus HOM05D000038 ORTHO05D000143 6.6e-12 73.9 65 61.5
Cfa002850 Carpinus fangiana HOM05D000038 ORTHO05D000143 8.7e-12 73.6 64 59.4
Dinv05704 Davidia involucrata HOM05D000038 ORTHO05D000143 1.1e-11 73.2 65 63.1
Prupe.6G164900 Prunus persica HOM05D000038 ORTHO05D000143 1.1e-11 73.2 63 61.9
Thecc.01G124000 Theobroma cacao HOM05D000038 ORTHO05D000143 1.1e-11 73.2 64 57.8
Prupe.6G158700 Prunus persica HOM05D000038 ORTHO05D000143 1.5e-11 72.8 63 61.9
CSS0019074 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.9e-11 72.4 56 64.3
Prupe.6G164400 Prunus persica HOM05D000038 ORTHO05D000143 1.9e-11 72.4 63 61.9
Atru.chr4.924 Acer truncatum HOM05D000038 ORTHO05D000143 3.3e-11 71.6 58 62.1
Atru.chr4.928 Acer truncatum HOM05D000038 ORTHO05D000143 3.3e-11 71.6 58 62.1
Atru.chr9.1771 Acer truncatum HOM05D000038 ORTHO05D000143 3.3e-11 71.6 66 60.6
Haze_25148 Corylus avellana HOM05D000038 ORTHO05D000143 3.3e-11 71.6 64 57.8
Potri.005G056800 Populus trichocarpa HOM05D000038 ORTHO05D000143 3.3e-11 71.6 63 60.3
Atru.chr4.926 Acer truncatum HOM05D000038 ORTHO05D000143 4.3e-11 71.2 59 59.3
DCAR_001429 Daucus carota HOM05D000038 ORTHO05D000143 4.3e-11 71.2 66 60.6
Actinidia06656 Actinidia chinensis HOM05D000038 ORTHO05D000143 5.6e-11 70.9 66 57.6
Potri.005G057000 Populus trichocarpa HOM05D000038 ORTHO05D000143 5.6e-11 70.9 63 60.3
CiPaw.03G126100 Carya illinoinensis HOM05D000038 ORTHO05D000143 7.3e-11 70.5 64 59.4
Duzib187G0473 Durio zibethinus HOM05D000038 ORTHO05D000143 7.3e-11 70.5 65 56.9
Duzib187G1542 Durio zibethinus HOM05D000038 ORTHO05D000143 7.3e-11 70.5 65 56.9
Thecc.01G124100 Theobroma cacao HOM05D000038 ORTHO05D000143 7.3e-11 70.5 64 56.2
CSS0046269 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 9.6e-11 70.1 56 60.7
Ciclev10027040m.g Citrus clementina HOM05D000038 ORTHO05D000143 9.6e-11 70.1 66 53.0
DCAR_001430 Daucus carota HOM05D000038 ORTHO05D000143 9.6e-11 70.1 66 60.6
QL10p050060 Quercus lobata HOM05D000038 ORTHO05D000143 9.6e-11 70.1 64 54.7
Sabra05G0048900 Salix brachista HOM05D000038 ORTHO05D000143 1.3e-10 69.7 62 58.1
Atru.chr9.1769 Acer truncatum HOM05D000038 ORTHO05D000143 1.6e-10 69.3 66 59.1
CSS0006119 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 1.6e-10 69.3 56 60.7
Duzib187G1796 Durio zibethinus HOM05D000038 ORTHO05D000143 1.6e-10 69.3 65 55.4
QL01p055210 Quercus lobata HOM05D000038 ORTHO05D000143 1.6e-10 69.3 64 54.7
QL10p049982 Quercus lobata HOM05D000038 ORTHO05D000143 1.6e-10 69.3 64 54.7
Oeu028488.2 Olea europaea HOM05D000038 ORTHO05D000143 2.1e-10 68.9 60 61.7
Oeu028489.1 Olea europaea HOM05D000038 ORTHO05D000143 2.1e-10 68.9 60 61.7
Sabra05G0049100 Salix brachista HOM05D000038 ORTHO05D000143 2.1e-10 68.9 62 54.8
MSTRG.23428 Avicennia marina HOM05D000038 ORTHO05D000143 2.8e-10 68.6 64 56.2
CiPaw.03G126900 Carya illinoinensis HOM05D000038 ORTHO05D000143 2.8e-10 68.6 64 59.4
Oeu020609.1 Olea europaea HOM05D000038 ORTHO05D000143 2.8e-10 68.6 65 61.5
Potri.005G056700 Populus trichocarpa HOM05D000038 ORTHO05D000143 2.8e-10 68.6 63 58.7
Rhsim10G0139700 Rhododendron simsii HOM05D000038 ORTHO05D000143 2.8e-10 68.6 58 63.8
FvH4_1g23370 Fragaria vesca HOM05D000038 ORTHO05D000143 3.6e-10 68.2 59 61.0
FAN26G0352 Fragaria x ananassa HOM05D000038 ORTHO05D000143 3.6e-10 68.2 59 61.0
MD15G1391100 Malus domestica HOM05D000038 ORTHO05D000143 3.6e-10 68.2 63 57.1
Manes.12G151500 Manihot esculenta HOM05D000038 ORTHO05D000143 3.6e-10 68.2 64 53.1
Manes.12G151750 Manihot esculenta HOM05D000038 ORTHO05D000143 3.6e-10 68.2 64 53.1
CSS0005436 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000143 4.8e-10 67.8 56 58.9
QL05p076666 Quercus lobata HOM05D000038 ORTHO05D000143 4.8e-10 67.8 64 51.6
vmacro12838 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 4.8e-10 67.8 57 59.6
vmacro12840 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 4.8e-10 67.8 57 59.6
Lj2C594G6 Lonicera japonica HOM05D000002 ORTHO05D000001 6.2e-10 67.4 53 66.0
CiPaw.03G127000 Carya illinoinensis HOM05D000038 ORTHO05D000143 8.1e-10 67.0 64 56.2
CiPaw.03G127400 Carya illinoinensis HOM05D000038 ORTHO05D000143 8.1e-10 67.0 64 56.2
DCAR_001428 Daucus carota HOM05D000038 ORTHO05D000143 8.1e-10 67.0 66 57.6
MD15G1391000 Malus domestica HOM05D000038 ORTHO05D000143 8.1e-10 67.0 63 55.6
Rhsim10G0139200 Rhododendron simsii HOM05D000038 ORTHO05D000143 8.1e-10 67.0 59 61.0
Eucgr.I00233 Eucalyptus grandis HOM05D000038 ORTHO05D000143 1.1e-09 66.6 60 60.0
QL01p055349 Quercus lobata HOM05D000038 ORTHO05D000143 1.1e-09 66.6 64 53.1
CiPaw.03G126600 Carya illinoinensis HOM05D000038 ORTHO05D000143 1.4e-09 66.2 63 55.6
Rhsim10G0140100 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.4e-09 66.2 59 62.7
Eucgr.I00234 Eucalyptus grandis HOM05D000038 ORTHO05D000143 1.8e-09 65.9 65 53.8
Prupe.6G158300 Prunus persica HOM05D000013 ORTHO05D000143 1.8e-09 65.9 63 61.9
CiPaw.03G126200 Carya illinoinensis HOM05D000038 ORTHO05D000143 2.4e-09 65.5 64 56.2
FAN23G0794 Fragaria x ananassa HOM05D000038 ORTHO05D000143 2.4e-09 65.5 59 57.6
QL12p018393 Quercus lobata HOM05D000038 ORTHO05D000143 2.4e-09 65.5 63 54.0
vmacro12839 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 2.4e-09 65.5 66 56.1
Actinidia27704 Actinidia chinensis HOM05D054098 ORTHO05D000143 3.1e-09 65.1 66 53.0
Cfa001166 Carpinus fangiana HOM05D000038 ORTHO05D000143 4.0e-09 64.7 62 56.5
Haze_25266 Corylus avellana HOM05D000038 ORTHO05D000143 4.0e-09 64.7 62 58.1
Haze_25301 Corylus avellana HOM05D000038 ORTHO05D000143 4.0e-09 64.7 62 58.1
QL12p018377 Quercus lobata HOM05D000038 ORTHO05D000143 4.0e-09 64.7 63 54.0
Gohir.A05G386600 Gossypium hirsutum HOM05D000038 ORTHO05D000143 5.3e-09 64.3 61 55.7
RcHm_v2.0_Chr2g0118321 Rosa chinensis HOM05D000038 ORTHO05D000143 5.3e-09 64.3 59 54.2
FAN23G2277 Fragaria x ananassa HOM05D000038 ORTHO05D000143 6.9e-09 63.9 59 57.6
Prupe.6G159000 Prunus persica HOM05D000013 ORTHO05D000143 6.9e-09 63.9 52 63.5
Rhsim10G0139500 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.9e-09 63.9 59 61.0
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 6.9e-09 63.9 62 56.5
FvH4_1g23380 Fragaria vesca HOM05D000038 ORTHO05D000143 9.0e-09 63.5 59 57.6
RcHm_v2.0_Chr2g0118331 Rosa chinensis HOM05D000038 ORTHO05D000143 9.0e-09 63.5 59 57.6
Haze_01613 Corylus avellana HOM05D000038 ORTHO05D000143 1.2e-08 63.2 62 56.5
Hma1.2p1_0006F.1_g004770 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 1.5e-08 62.8 62 59.7
Rhsim10G0140400 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.5e-08 62.8 59 59.3
Cfa017759 Carpinus fangiana HOM05D000038 ORTHO05D000143 2.0e-08 62.4 62 56.5
Ciclev10027387m.g Citrus clementina HOM05D000038 ORTHO05D000143 2.0e-08 62.4 57 54.4
Gohir.A05G386800 Gossypium hirsutum HOM05D000038 ORTHO05D000143 2.0e-08 62.4 61 55.7
Gorai.012G032900 Gossypium raimondii HOM05D000038 ORTHO05D000143 2.0e-08 62.4 61 55.7
Prupe.6G158900 Prunus persica HOM05D000038 ORTHO05D000143 2.0e-08 62.4 51 62.7
vmacro12837 Vaccinium macrocarpon HOM05D000038 ORTHO05D000143 2.0e-08 62.4 59 57.6
Cfa017760 Carpinus fangiana HOM05D000038 ORTHO05D000143 2.6e-08 62.0 62 56.5
Cfa017762 Carpinus fangiana HOM05D001143 ORTHO05D000143 2.6e-08 62.0 62 54.8
Cc07_g17690 Coffea canephora HOM05D000038 ORTHO05D000143 2.6e-08 62.0 67 55.2
Eucgr.I00232 Eucalyptus grandis HOM05D000038 ORTHO05D000143 2.6e-08 62.0 60 56.7
Gohir.D04G029400 Gossypium hirsutum HOM05D000038 ORTHO05D000143 2.6e-08 62.0 61 55.7
Gohir.D04G029600 Gossypium hirsutum HOM05D000038 ORTHO05D000143 2.6e-08 62.0 61 55.7
Gorai.012G033000 Gossypium raimondii HOM05D000038 ORTHO05D000143 2.6e-08 62.0 61 55.7
PGR102G0075 Punica granatum HOM05D000038 ORTHO05D000143 2.6e-08 62.0 66 50.0
PGR102G0535 Punica granatum HOM05D000038 ORTHO05D000143 2.6e-08 62.0 66 50.0
RcHm_v2.0_Chr2g0118591 Rosa chinensis HOM05D000038 ORTHO05D000143 2.6e-08 62.0 59 54.2
CiPaw.03G189900 Carya illinoinensis HOM05D000038 ORTHO05D000143 3.4e-08 61.6 66 59.1
Hma1.2p1_0134F.1_g061630 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 4.4e-08 61.2 62 59.7
Rhsim10G0139800 Rhododendron simsii HOM05D000038 ORTHO05D000143 4.4e-08 61.2 58 60.3
Oeu004254.1 Olea europaea HOM05D000038 ORTHO05D000143 5.8e-08 60.8 61 55.7
Lj2A599T26 Lonicera japonica HOM05D000038 ORTHO05D000143 7.6e-08 60.5 47 74.5
Nitab4.5_0008350g0030 Nicotiana tabacum HOM05D000038 ORTHO05D000143 7.6e-08 60.5 65 56.9
QL03p029816 Quercus lobata HOM05D000038 ORTHO05D000143 7.6e-08 60.5 59 55.9
Cc07_g17730 Coffea canephora HOM05D000038 ORTHO05D000143 9.9e-08 60.1 58 58.6
Cc07_g17750 Coffea canephora HOM05D000038 ORTHO05D000143 9.9e-08 60.1 58 58.6
Haze_25293 Corylus avellana HOM05D000038 ORTHO05D000143 9.9e-08 60.1 62 54.8
Duzib116G0827 Durio zibethinus HOM05D000038 ORTHO05D000143 9.9e-08 60.1 62 51.6
Cc07_g17740 Coffea canephora HOM05D000038 ORTHO05D000143 1.3e-07 59.7 67 52.2
Nitab4.5_0008350g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000143 1.3e-07 59.7 65 56.9
Cfa018338 Carpinus fangiana HOM05D000038 ORTHO05D000143 1.7e-07 59.3 64 53.1
Cc07_g17760 Coffea canephora HOM05D000038 ORTHO05D000143 1.7e-07 59.3 67 53.7
Gohir.D04G029300 Gossypium hirsutum HOM05D000038 ORTHO05D000143 1.7e-07 59.3 61 54.1
CiPaw.03G126400 Carya illinoinensis HOM05D000038 ORTHO05D000143 2.2e-07 58.9 52 59.6
Cc07_g17700 Coffea canephora HOM05D000038 ORTHO05D000143 2.2e-07 58.9 67 52.2
CAN.G1051.2 Capsicum annuum HOM05D000038 ORTHO05D000143 2.9e-07 58.5 65 55.4
Haze_17736 Corylus avellana HOM05D000038 ORTHO05D000143 2.9e-07 58.5 66 50.0
DCAR_001366 Daucus carota HOM05D000031 ORTHO05D000143 2.9e-07 58.5 57 54.4
Nn1g06135 Nelumbo nucifera HOM05D000038 ORTHO05D000143 2.9e-07 58.5 59 50.8
PGSC0003DMG400003999 Solanum tuberosum HOM05D000038 ORTHO05D000143 2.9e-07 58.5 65 55.4
CiPaw.03G125400 Carya illinoinensis HOM05D000038 ORTHO05D000143 3.8e-07 58.2 68 54.4
Dinv25841 Davidia involucrata HOM05D000038 ORTHO05D000143 3.8e-07 58.2 64 48.4
Oeu033364.1 Olea europaea HOM05D000038 ORTHO05D000143 3.8e-07 58.2 72 48.6
PGR119G2114 Punica granatum HOM05D000038 ORTHO05D000143 3.8e-07 58.2 60 50.0
Solyc11g005630.1 Solanum lycopersicum HOM05D000038 ORTHO05D000143 3.8e-07 58.2 59 55.9
Sopen11g001590 Solanum pennellii HOM05D000038 ORTHO05D000143 3.8e-07 58.2 59 55.9
Dinv25839 Davidia involucrata HOM05D000038 ORTHO05D000143 4.9e-07 57.8 64 48.4
Nitab4.5_0004710g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000143 4.9e-07 57.8 59 55.9
CiPaw.03G125500 Carya illinoinensis HOM05D000038 ORTHO05D000143 6.4e-07 57.4 66 57.6
DCAR_001365 Daucus carota HOM05D000031 ORTHO05D000143 6.4e-07 57.4 68 48.5
QL02p024456 Quercus lobata HOM05D000038 ORTHO05D000143 6.4e-07 57.4 57 49.1
QL12p033758 Quercus lobata HOM05D000038 ORTHO05D000143 6.4e-07 57.4 71 43.7
Duzib041G0552 Durio zibethinus HOM05D000038 ORTHO05D000143 8.4e-07 57.0 62 51.6
Gohir.D04G029500 Gossypium hirsutum HOM05D000038 ORTHO05D000143 8.4e-07 57.0 63 50.8
QL02p024359 Quercus lobata HOM05D000038 ORTHO05D000143 8.4e-07 57.0 57 49.1
Dinv18492 Davidia involucrata HOM05D000038 ORTHO05D000143 1.1e-06 56.6 59 50.8
ECA233G5244 Erigeron canadensis HOM05D000038 ORTHO05D000143 1.1e-06 56.6 55 56.4
Eucgr.H04929 Eucalyptus grandis HOM05D000038 ORTHO05D000143 1.1e-06 56.6 62 45.2
Nn4g26298 Nelumbo nucifera HOM05D000038 ORTHO05D000143 1.4e-06 56.2 61 44.3
CAN.G1994.1 Capsicum annuum HOM05D000038 ORTHO05D000143 1.9e-06 55.8 66 53.0
Nitab4.5_0002909g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000143 1.9e-06 55.8 59 55.9
QL12p033730 Quercus lobata HOM05D000038 ORTHO05D028570 1.9e-06 55.8 63 44.4
RcHm_v2.0_Chr2g0118601 Rosa chinensis HOM05D000038 ORTHO05D000143 1.9e-06 55.8 59 49.2
SEGI_24022 Sequoiadendron giganteum HOM05D000038 ORTHO05D028570 1.9e-06 55.8 62 43.5
Haze_25142 Corylus avellana HOM05D000038 ORTHO05D000143 2.4e-06 55.5 46 65.2
Dinv05692 Davidia involucrata HOM05D000038 ORTHO05D001602 2.4e-06 55.5 80 45.0
Dinv41101 Davidia involucrata HOM05D000038 ORTHO05D000143 2.4e-06 55.5 59 49.2
ECA233G0887 Erigeron canadensis HOM05D000038 ORTHO05D000143 2.4e-06 55.5 55 54.5
QL10p049917 Quercus lobata HOM05D000038 ORTHO05D000143 2.4e-06 55.5 68 48.5
Cc07_g17710 Coffea canephora HOM05D000038 ORTHO05D000143 3.2e-06 55.1 66 51.5
Nn1g06141 Nelumbo nucifera HOM05D000038 ORTHO05D000143 3.2e-06 55.1 57 50.9
Lsat_1_v5_gn_8_35781 Lactuca sativa HOM05D000038 ORTHO05D000143 4.2e-06 54.7 63 47.6
Cfa000741 Carpinus fangiana HOM05D000038 ORTHO05D000143 5.4e-06 54.3 63 49.2
ECA233G2730 Erigeron canadensis HOM05D000038 ORTHO05D000143 5.4e-06 54.3 55 52.7
QL01p055416 Quercus lobata HOM05D000038 ORTHO05D000143 5.4e-06 54.3 50 56.0
Thecc.08G148500 Theobroma cacao HOM05D000038 ORTHO05D000143 5.4e-06 54.3 62 50.0
Lsat_1_v5_gn_8_35060 Lactuca sativa HOM05D000038 ORTHO05D000143 7.1e-06 53.9 53 56.6
Lsat_1_v5_gn_8_34901 Lactuca sativa HOM05D000038 ORTHO05D000143 9.3e-06 53.5 53 54.7
Manes.03G180100 Manihot esculenta HOM05D000038 ORTHO05D000143 9.3e-06 53.5 55 49.1
Thecc.08G148200 Theobroma cacao HOM05D000038 ORTHO05D000143 9.3e-06 53.5 62 48.4


User provided reference genes

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