Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 6.2e-266 920.2 465 100.0
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 6.5e-199 697.6 463 76.0
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.7e-197 691.4 463 75.2
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 3.1e-193 678.7 462 73.4
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 7.7e-192 674.1 463 73.0
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 3.8e-191 671.8 463 72.8
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 9.5e-190 667.2 461 72.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 6.1e-189 664.5 461 72.5
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 5.7e-187 657.9 460 71.7
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.3e-183 646.7 464 70.7
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.3e-183 646.7 462 70.6
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 3.9e-183 645.2 462 71.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 6.6e-183 644.4 462 71.0
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 8.6e-183 644.0 501 66.5
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 8.6e-183 644.0 463 72.1
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.1e-182 643.7 459 71.2
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.5e-182 642.5 462 71.2
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.3e-182 642.1 462 70.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 5.6e-182 641.3 463 69.5
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 1.2e-181 640.2 462 70.3
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.8e-181 639.0 463 70.4
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.7e-181 638.3 456 69.7
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.0e-180 637.1 459 69.5
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.8e-180 636.3 462 69.5
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.2e-179 633.6 463 71.3
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.4e-179 632.1 462 68.4
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 4.4e-179 631.7 462 69.7
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 5.8e-179 631.3 467 68.5
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.2e-178 629.4 462 69.0
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.2e-178 629.4 458 69.4
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 2.9e-178 629.0 458 69.7
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 3.7e-178 628.6 459 68.8
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 3.7e-178 628.6 462 69.0
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 4.9e-178 628.2 462 69.0
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 4.9e-178 628.2 464 68.8
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.4e-178 627.9 463 69.3
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 8.3e-178 627.5 456 68.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.1e-177 627.1 452 70.6
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.4e-177 625.9 459 69.1
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 7.8e-176 620.9 464 68.3
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 7.8e-176 620.9 459 67.1
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.0e-175 620.5 463 68.9
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 2.3e-175 619.4 458 69.2
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.3e-175 619.4 463 68.5
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 5.0e-175 618.2 464 68.3
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 6.6e-175 617.8 458 69.2
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 6.6e-175 617.8 456 68.0
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 1.1e-174 617.1 459 67.5
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 3.3e-174 615.5 457 69.6
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 7.3e-174 614.4 459 66.4
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.2e-173 613.6 458 66.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 3.6e-173 612.1 464 67.5
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 4.7e-173 611.7 459 68.4
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 8.1e-173 610.9 463 66.7
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 3.1e-172 609.0 456 68.4
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 6.8e-172 607.8 456 68.9
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-171 607.1 459 67.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 3.4e-171 605.5 457 68.7
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 9.8e-171 604.0 461 67.0
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.1e-169 600.5 456 67.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.2e-168 597.0 463 67.4
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.6e-168 596.7 455 68.4
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 4.6e-168 595.1 463 67.6
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.0e-168 594.7 498 63.1
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.9e-167 592.0 496 62.7
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 5.1e-167 591.7 462 66.0
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.1e-167 591.7 463 65.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.6e-167 590.9 454 66.3
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 1.9e-166 589.7 455 67.0
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 7.3e-166 587.8 462 65.6
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 6.2e-165 584.7 442 68.3
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.1e-164 583.9 542 58.5
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.1e-164 583.9 461 63.6
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.8e-164 583.2 497 62.8
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.3e-164 582.8 553 56.2
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.0e-164 582.0 442 67.9
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.0e-163 579.7 459 65.1
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.0e-163 579.7 462 64.5
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.7e-162 576.6 468 64.1
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.9e-162 575.9 401 73.8
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-161 573.9 460 65.0
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.2e-161 570.9 462 63.2
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 6.0e-160 568.2 456 63.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.9e-158 563.1 386 74.1
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 4.3e-158 562.0 462 63.0
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 3.1e-156 555.8 463 62.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.6e-152 542.0 470 61.1
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 2.3e-151 539.7 447 62.6
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 6.9e-148 528.1 704 45.9
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.3e-146 523.9 462 61.0
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.1e-142 510.8 405 64.7
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 2.5e-142 509.6 453 60.7
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.3e-142 508.1 465 59.4
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 4.8e-141 505.4 402 64.9
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 4.0e-140 502.3 481 58.4
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 4.0e-140 502.3 753 41.3
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 9.0e-140 501.1 456 59.9
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.2e-136 490.7 406 63.3
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.6e-136 488.8 406 63.1
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 3.7e-133 479.2 386 64.5
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 5.1e-127 458.8 463 52.7
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.7e-122 443.7 467 50.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 5.0e-122 442.2 458 50.4
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 2.1e-120 436.8 298 73.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.8e-119 433.7 338 66.6
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.6e-115 419.9 322 66.8
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.7e-114 417.2 302 70.9
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 4.2e-113 412.5 367 59.1
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 6.3e-109 398.7 460 48.7
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 4.7e-96 355.9 378 49.7
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.2e-90 337.0 247 70.0
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.6e-88 330.9 223 75.8
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 9.1e-84 315.1 219 73.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 9.8e-70 268.5 261 59.8
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.0e-66 256.1 466 39.1
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 2.8e-64 250.4 448 34.8
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.7e-64 249.6 161 75.8
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.2e-62 245.0 313 48.2
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 3.2e-60 236.9 245 55.5
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 8.9e-55 218.8 159 68.6
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.6e-54 217.2 164 67.1
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.4e-52 209.5 134 77.6
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 4.7e-48 196.4 141 68.8
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.1e-44 183.3 140 67.9
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.6e-40 170.2 324 34.3
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.1e-40 169.1 149 55.0
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 2.7e-35 154.1 200 47.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 7.8e-35 152.5 193 47.7
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.9e-27 125.9 120 54.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 9.0e-23 112.5 147 47.6
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 4.5e-22 110.2 95 55.8
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 9.9e-22 109.0 55 85.5
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 6.0e-19 99.8 159 38.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 2.3e-18 97.8 74 62.2
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 9.6e-17 92.4 71 62.0
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.1e-16 91.3 77 57.1
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.5e-14 85.1 85 47.1
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.0e-10 72.4 54 68.5
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.3e-08 65.5 43 67.4
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 6.3e-08 63.2 45 71.1
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.5e-06 58.5 52 53.8
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 4.5e-06 57.0 47 61.7
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.0e-05 55.8 42 57.1


User provided reference genes

Program Settings