Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 4.3e-108 394.8 218 100.0
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 8.2e-27 124.8 215 40.9
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 2.4e-18 96.7 124 37.1
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.1e-18 95.9 190 35.8
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 9.1e-18 94.7 124 41.9
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 2.0e-17 93.6 109 43.1
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 3.5e-17 92.8 124 37.1
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.0e-16 91.3 107 43.9
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 1.0e-16 91.3 108 42.6
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 3.8e-16 89.4 109 44.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 3.8e-16 89.4 112 43.8
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 5.0e-16 89.0 127 35.4
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 5.0e-16 89.0 109 42.2
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 6.5e-16 88.6 105 44.8
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.5e-16 88.6 109 43.1
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.5e-16 88.6 108 42.6
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 6.5e-16 88.6 122 38.5
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 8.5e-16 88.2 109 43.1
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.5e-15 87.4 107 46.7
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 1.5e-15 87.4 127 40.2
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 1.9e-15 87.0 109 46.8
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.2e-15 86.3 107 41.1
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.2e-14 84.3 125 38.4
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.6e-14 84.0 123 43.1
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 2.1e-14 83.6 122 40.2
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.1e-14 83.6 108 40.7
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 3.6e-14 82.8 109 43.1
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.4e-13 80.9 111 36.9
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.8e-13 80.5 124 39.5
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 1.8e-13 80.5 103 41.7
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.3e-13 80.1 102 43.1
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 2.3e-13 80.1 106 43.4
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 3.0e-13 79.7 135 34.8
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 4.0e-13 79.3 107 44.9
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 5.2e-13 79.0 108 37.0
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 6.7e-13 78.6 109 38.5
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 8.8e-13 78.2 111 36.0
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 8.8e-13 78.2 111 36.0
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 8.8e-13 78.2 103 41.7
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.2e-12 77.8 108 38.9
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.0e-12 77.0 107 42.1
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 2.0e-12 77.0 123 36.6
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 2.0e-12 77.0 124 41.1
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 2.0e-12 77.0 127 36.2
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 2.6e-12 76.6 118 34.7
TAR376G0070 Trochodendron aralioides HOM05D015253 ORTHO05D002375 3.3e-12 76.3 110 36.4
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 4.4e-12 75.9 125 30.4
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 4.4e-12 75.9 107 40.2
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 7.5e-12 75.1 108 37.0
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.3e-11 74.3 108 37.0
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 1.3e-11 74.3 99 40.4
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.2e-11 73.6 108 36.1
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 3.7e-11 72.8 110 38.2
HanXRQChr17g0556291 Helianthus annuus HOM05D004728 ORTHO05D002375 3.7e-11 72.8 95 38.9
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 3.7e-11 72.8 114 39.5
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 4.8e-11 72.4 98 39.8
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 6.3e-11 72.0 120 29.2
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 8.2e-11 71.6 108 38.0
Migut.L00163 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.1e-10 71.2 102 37.3
PSO541G3905 Papaver somniferum HOM05D015253 ORTHO05D023059 1.1e-10 71.2 89 40.4
PSO675G1823 Papaver somniferum HOM05D015253 ORTHO05D023059 1.1e-10 71.2 89 39.3
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 1.4e-10 70.9 112 32.1
Lsat_1_v5_gn_1_2940 Lactuca sativa HOM05D004728 ORTHO05D002375 1.8e-10 70.5 125 31.2
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 1.8e-10 70.5 102 33.3
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 1.8e-10 70.5 110 38.2
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 2.4e-10 70.1 100 40.0
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 3.1e-10 69.7 101 35.6
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 3.1e-10 69.7 106 33.0
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 3.1e-10 69.7 99 38.4
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 3.1e-10 69.7 118 35.6
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.1e-10 69.3 99 38.4
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 4.1e-10 69.3 123 31.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 4.1e-10 69.3 110 37.3
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 7.0e-10 68.6 108 38.0
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 9.1e-10 68.2 99 34.3
PSO675G0090 Papaver somniferum HOM05D015253 ORTHO05D023059 9.1e-10 68.2 92 37.0
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 9.1e-10 68.2 84 42.9
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 1.2e-09 67.8 109 36.7
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.0e-09 67.0 100 32.0
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 2.7e-09 66.6 100 35.0
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 2.7e-09 66.6 106 35.8
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 3.5e-09 66.2 108 36.1
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 4.5e-09 65.9 122 29.5
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 4.5e-09 65.9 106 43.4
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.5e-09 65.9 122 27.9
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 5.9e-09 65.5 124 32.3
PSO675G4345 Papaver somniferum HOM05D015253 ORTHO05D023059 7.7e-09 65.1 89 33.7
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.0e-08 64.7 118 33.1
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.7e-08 63.9 108 34.3
PSO541G0804 Papaver somniferum HOM05D004728 ORTHO05D002375 1.7e-08 63.9 109 39.4
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 2.2e-08 63.5 124 31.5
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 2.2e-08 63.5 107 34.6
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.2e-08 63.5 107 34.6
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.2e-08 63.5 107 37.4
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 2.9e-08 63.2 113 37.2
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.9e-08 63.2 99 36.4
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 3.8e-08 62.8 95 33.7
GSVIVG01003435001 Vitis vinifera HOM05D004728 ORTHO05D002375 3.8e-08 62.8 100 34.0
Dinv13237 Davidia involucrata HOM05D004728 ORTHO05D002375 5.0e-08 62.4 159 31.4
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 5.0e-08 62.4 108 31.5
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 6.5e-08 62.0 127 30.7
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.5e-08 62.0 115 39.1
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 6.5e-08 62.0 102 33.3
Solyc05g051450.2 Solanum lycopersicum HOM05D019315 ORTHO05D002375 6.5e-08 62.0 126 31.7
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 8.5e-08 61.6 121 28.1
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 8.5e-08 61.6 124 31.5
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 8.5e-08 61.6 90 40.0
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 1.1e-07 61.2 100 33.0
Lsat_1_v5_gn_1_2860 Lactuca sativa HOM05D004728 ORTHO05D002375 1.1e-07 61.2 130 28.5
FAN26G2532 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.5e-07 60.8 108 34.3
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.9e-07 60.5 100 38.0
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 2.5e-07 60.1 116 31.9
PSO541G5620 Papaver somniferum HOM05D015253 ORTHO05D023059 2.5e-07 60.1 89 34.8
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 3.2e-07 59.7 97 36.1
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 4.2e-07 59.3 98 31.6
Oeu002157.4 Olea europaea HOM05D004728 ORTHO05D002375 5.5e-07 58.9 95 32.6
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.5e-07 58.9 121 28.9
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 5.5e-07 58.9 112 34.8
Sopen05g029860 Solanum pennellii HOM05D000436 ORTHO05D001944 5.5e-07 58.9 158 27.2
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 7.2e-07 58.5 100 31.0
PSO700G0018 Papaver somniferum HOM05D015253 ORTHO05D002375 7.2e-07 58.5 70 40.0
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 9.4e-07 58.2 118 31.4
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 9.4e-07 58.2 97 30.9
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 9.4e-07 58.2 113 32.7
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 9.4e-07 58.2 113 32.7
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.2e-06 57.8 108 34.3
Lsat_1_v5_gn_1_2800 Lactuca sativa HOM05D037404 ORTHO05D035140 1.2e-06 57.8 108 30.6
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.2e-06 57.8 110 31.8
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 1.2e-06 57.8 103 35.9
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 1.6e-06 57.4 95 35.8
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.6e-06 57.4 95 35.8
MD15G1317500 Malus domestica HOM05D004728 ORTHO05D002375 1.6e-06 57.4 50 48.0
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.6e-06 57.4 95 35.8
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 1.6e-06 57.4 127 29.1
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 1.6e-06 57.4 108 32.4
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 1.6e-06 57.4 101 37.6
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 1.6e-06 57.4 126 27.8
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 2.1e-06 57.0 100 30.0
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 2.1e-06 57.0 128 28.1
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 2.1e-06 57.0 123 30.1
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 2.1e-06 57.0 108 32.4
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.1e-06 57.0 119 30.3
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 2.7e-06 56.6 92 40.2
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 2.7e-06 56.6 97 35.1
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 2.7e-06 56.6 96 37.5
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 3.6e-06 56.2 125 33.6
Nitab4.5_0003374g0020 Nicotiana tabacum HOM05D012586 ORTHO05D012196 3.6e-06 56.2 107 33.6
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 4.7e-06 55.8 124 32.3
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 4.7e-06 55.8 107 31.8
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.1e-06 55.5 109 32.1
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 6.1e-06 55.5 99 28.3
Nitab4.5_0007336g0010 Nicotiana tabacum HOM05D012586 ORTHO05D012196 6.1e-06 55.5 107 32.7
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 8.0e-06 55.1 128 27.3
Prupe.6G194200 Prunus persica HOM05D004728 ORTHO05D002375 8.0e-06 55.1 49 46.9
Solyc04g074780.4 Solanum lycopersicum HOM05D021150 ORTHO05D002375 8.0e-06 55.1 107 30.8


User provided reference genes

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