Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 0.0e+00 1199.5 695 100.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.3e-155 554.3 764 57.9
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.5e-141 505.8 772 56.7
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.7e-137 493.0 733 52.9
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.4e-135 486.5 736 54.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.2e-133 479.9 740 51.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.8e-131 474.2 749 54.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.0e-131 473.4 747 54.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 3.9e-131 473.0 730 51.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.1e-131 472.6 734 51.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.8e-129 466.8 712 55.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.4e-128 464.5 724 54.1
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.9e-126 456.8 759 53.1
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.2e-125 453.0 797 49.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.2e-125 453.0 709 55.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.1e-120 438.3 707 53.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.8e-120 437.6 662 53.0
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.1e-116 424.1 710 44.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.6e-116 422.9 755 47.3
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 7.9e-116 422.2 765 53.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.7e-114 416.0 786 48.2
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.3e-113 414.8 694 52.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.2e-113 414.1 777 46.5
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.8e-113 412.9 775 50.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 8.2e-113 412.1 708 51.7
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-112 411.0 704 50.1
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.1e-112 409.8 776 47.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.9e-110 403.7 682 46.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 9.4e-109 398.7 742 51.2
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.8e-107 394.4 780 46.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.9e-107 393.3 766 50.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-105 388.3 752 43.8
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.3e-105 386.0 745 44.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.8e-104 384.4 759 49.4
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.1e-104 383.3 730 51.6
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 5.9e-103 379.4 766 48.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.7e-103 379.0 724 50.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 6.5e-102 375.9 693 47.9
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 8.5e-102 375.6 693 48.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.5e-101 374.8 792 50.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.5e-101 374.8 701 48.1
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.7e-100 370.5 743 44.3
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.6e-100 370.2 774 48.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 8.8e-99 365.5 754 44.2
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-98 364.8 751 44.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-98 364.8 751 44.2
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.5e-98 364.8 761 48.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.0e-98 364.4 768 45.8
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.6e-98 364.0 755 50.2
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.7e-98 362.8 783 45.5
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.7e-97 361.3 814 46.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.3e-97 359.4 753 43.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.8e-96 357.8 750 43.3
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.3e-96 356.3 756 47.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.0e-96 355.9 736 48.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.3e-94 351.7 772 44.4
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.7e-94 351.3 718 48.3
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.9e-94 350.5 706 48.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 5.5e-93 346.3 710 48.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 9.4e-93 345.5 710 47.3
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.2e-92 345.1 775 44.3
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.0e-91 342.0 774 44.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.4e-91 341.7 779 42.5
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.3e-91 340.9 735 40.7
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.7e-87 325.9 740 39.9
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.3e-86 325.1 728 48.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.7e-86 324.7 643 45.4
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-86 324.3 694 40.5
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.9e-86 323.9 743 45.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.6e-84 318.2 750 42.0
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.0e-83 315.5 682 43.4
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.5e-82 311.6 578 43.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.5e-82 311.6 739 40.7
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.0e-82 311.2 684 47.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 5.7e-82 309.7 683 48.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 7.5e-82 309.3 698 42.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-81 307.0 697 44.6
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.4e-80 304.3 709 39.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 3.8e-78 297.0 735 40.3
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.5e-77 295.0 724 42.1
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.5e-77 294.3 743 42.9
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.8e-76 290.8 693 41.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.8e-75 288.1 694 42.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.8e-74 282.3 615 42.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 6.4e-73 279.6 749 43.7
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.4e-72 278.5 680 43.5
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.8e-72 278.1 720 41.0
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 3.2e-72 277.3 682 41.2
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.4e-72 276.6 663 39.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 5.4e-72 276.6 728 37.0
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.6e-71 275.0 771 36.4
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.8e-71 272.7 726 38.3
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.3e-69 266.2 739 42.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-68 265.4 265 61.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.8e-67 261.5 462 45.2
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.3e-67 261.2 788 35.8
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 5.2e-67 260.0 330 55.8
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.7e-65 255.0 729 37.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.4e-65 253.1 715 37.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.4e-64 250.0 753 40.2
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.4e-64 250.0 728 37.4
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 9.2e-64 249.2 697 36.6
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.0e-63 248.1 747 40.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.4e-59 235.3 707 35.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.8e-58 229.9 737 41.5
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 5.8e-58 229.9 775 33.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.3e-57 228.8 749 34.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.9e-57 227.6 447 53.2
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.7e-57 227.3 730 41.8
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-56 225.7 743 40.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.4e-56 223.4 743 41.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 3.5e-55 220.7 404 57.2
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.3e-54 218.0 722 40.6
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.6e-52 211.8 715 36.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.4e-51 208.8 737 34.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.4e-51 208.8 602 41.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.8e-51 208.4 631 39.9
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.0e-51 207.2 740 38.8
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.2e-50 205.7 623 37.7
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.5e-50 205.3 613 37.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.3e-49 202.2 476 41.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.9e-49 201.1 726 40.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.9e-49 201.1 658 42.7
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.9e-49 201.1 751 41.4
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.8e-49 200.7 754 39.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 4.9e-49 200.3 735 40.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-48 199.1 727 40.2
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 7.1e-48 196.4 645 38.0
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-47 195.7 692 33.4
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.7e-47 194.5 630 36.7
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.0e-46 191.0 625 35.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.9e-45 188.3 629 40.4
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.3e-41 175.6 604 34.8
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.8e-41 174.1 231 52.8
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.9e-40 171.8 686 33.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.4e-40 171.4 727 32.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.2e-40 171.0 189 56.1
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.0e-38 166.0 614 33.7
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-38 165.2 319 42.6
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.3e-38 164.9 519 35.5
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 3.9e-38 164.1 165 61.2
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-36 157.9 703 30.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 6.2e-36 156.8 712 38.3
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.2e-32 144.4 805 29.7
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.0e-30 139.4 454 43.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.8e-27 128.6 624 33.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.1e-27 127.9 589 29.7
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.6e-26 124.8 127 58.3
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-25 121.3 627 33.0
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.9e-25 121.3 627 33.0
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.5e-23 114.4 199 46.2
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.3e-22 112.5 626 37.1
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.8e-22 112.1 627 31.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.6e-20 105.5 434 39.9
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-20 104.8 627 34.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.4e-18 97.8 133 48.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.3e-17 95.9 139 51.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 6.5e-17 93.6 598 31.1
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 8.4e-17 93.2 196 42.3
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 8.4e-17 93.2 123 56.9
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.0e-15 87.0 225 37.3
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-13 82.8 315 33.0
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.8e-11 75.5 104 51.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.5e-10 72.4 97 49.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.6e-10 71.6 233 33.0
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.3e-09 69.3 105 48.6
Oeu030973.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-09 68.9 94 50.0
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.0e-09 67.4 130 44.6
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 7.9e-07 60.1 59 57.6
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 3.0e-06 58.2 84 53.6
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 3.9e-06 57.8 204 47.1


User provided reference genes

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