Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 1.5e-74 282.7 140 100.0
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 1.8e-59 232.6 127 89.8
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 4.0e-59 231.5 130 88.5
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 2.6e-58 228.8 127 89.0
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 9.8e-58 226.9 128 84.4
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 1.3e-57 226.5 127 87.4
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 1.3e-57 226.5 127 87.4
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 2.9e-57 225.3 128 83.6
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 4.9e-57 224.6 127 86.6
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 8.3e-57 223.8 127 85.0
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 1.4e-56 223.0 127 85.8
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 1.9e-56 222.6 127 85.0
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 2.4e-56 222.2 127 85.0
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 3.2e-56 221.9 127 84.3
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 4.1e-56 221.5 127 86.6
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 7.1e-56 220.7 127 85.0
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 9.2e-56 220.3 128 82.0
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 9.2e-56 220.3 128 81.2
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 1.2e-55 219.9 127 83.5
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.2e-55 219.9 128 81.2
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.2e-55 219.9 128 81.2
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 1.2e-55 219.9 127 83.5
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 1.2e-55 219.9 127 83.5
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 2.7e-55 218.8 130 81.5
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 3.5e-55 218.4 128 81.2
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 4.6e-55 218.0 127 83.5
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 6.0e-55 217.6 127 83.5
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 7.8e-55 217.2 126 85.7
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 7.8e-55 217.2 128 81.2
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 1.3e-54 216.5 127 81.9
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-54 215.7 127 83.5
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.3e-54 215.7 127 83.5
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 2.3e-54 215.7 130 85.4
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 3.0e-54 215.3 127 82.7
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 5.1e-54 214.5 127 82.7
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.6e-54 214.2 127 82.7
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 6.6e-54 214.2 126 82.5
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 8.6e-54 213.8 127 79.5
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 3.3e-53 211.8 127 80.3
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 3.3e-53 211.8 127 82.7
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 4.3e-53 211.5 127 80.3
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 4.3e-53 211.5 126 82.5
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 7.3e-53 210.7 130 80.0
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 9.5e-53 210.3 127 82.7
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 9.5e-53 210.3 127 80.3
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 2.1e-52 209.1 127 81.9
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 2.1e-52 209.1 127 82.7
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 3.6e-52 208.4 127 80.3
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 4.7e-52 208.0 127 79.5
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 4.7e-52 208.0 127 79.5
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 4.7e-52 208.0 127 82.7
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 4.7e-52 208.0 127 81.1
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 6.2e-52 207.6 130 77.7
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 8.1e-52 207.2 127 80.3
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 1.4e-51 206.5 127 79.5
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 1.8e-51 206.1 127 81.1
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 2.3e-51 205.7 127 79.5
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 4.0e-51 204.9 127 78.0
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 5.2e-51 204.5 127 76.4
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 6.8e-51 204.1 127 78.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 8.9e-51 203.8 147 71.4
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 1.2e-50 203.4 127 78.0
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 1.5e-50 203.0 127 78.0
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 2.0e-50 202.6 127 80.3
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.8e-50 201.1 128 77.3
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 5.8e-50 201.1 127 78.0
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 1.7e-49 199.5 126 77.8
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 2.2e-49 199.1 126 77.0
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 3.8e-49 198.4 127 76.4
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 1.1e-48 196.8 126 77.0
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 1.1e-48 196.8 127 73.2
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 3.2e-48 195.3 127 75.6
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 3.2e-48 195.3 127 78.0
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 9.2e-48 193.7 127 74.8
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 1.2e-47 193.4 127 74.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 1.6e-47 193.0 127 73.2
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 2.1e-47 192.6 127 74.0
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 2.1e-47 192.6 127 74.0
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 2.1e-47 192.6 127 71.7
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 2.7e-47 192.2 127 73.2
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 1.7e-46 189.5 127 73.2
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 2.3e-46 189.1 130 70.0
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 1.8e-43 179.5 127 68.5
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 3.4e-42 175.3 233 46.4
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 6.4e-41 171.0 126 65.1
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 1.9e-40 169.5 127 66.1
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 1.9e-40 169.5 126 64.3
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 4.2e-40 168.3 127 64.6
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.2e-36 154.5 129 62.8
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 2.4e-35 152.5 98 80.6
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.4e-35 152.5 128 60.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 5.3e-35 151.4 125 61.6
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 5.4e-32 141.4 127 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 1.8e-30 136.3 127 52.0
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 9.0e-27 124.0 127 46.5
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 9.0e-27 124.0 126 46.0
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 7.6e-26 120.9 127 43.3
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.0e-23 111.3 59 89.8
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 3.1e-11 72.4 130 32.3
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 5.5e-08 61.6 31 83.9
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 4.6e-07 58.5 27 88.9


User provided reference genes

Program Settings