Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 1.7e-199 699.1 344 100.0
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.4e-134 482.6 453 57.6
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.9e-131 473.0 459 55.8
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.9e-131 473.0 446 56.3
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 9.6e-131 470.7 443 57.6
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 1.6e-130 469.9 447 56.8
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 4.5e-128 461.8 451 55.7
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 5.8e-128 461.5 458 54.8
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 5.8e-128 461.5 458 54.8
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 7.6e-128 461.1 458 54.8
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.7e-127 459.9 450 55.1
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.9e-127 459.1 451 54.8
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.5e-126 454.9 452 55.3
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 9.3e-126 454.1 448 54.0
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.6e-125 453.4 447 55.0
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.1e-125 453.0 444 55.0
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.5e-125 452.2 447 53.9
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 3.5e-125 452.2 450 53.8
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 7.9e-125 451.1 446 53.6
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 2.3e-124 449.5 443 54.2
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.1e-124 448.4 444 55.2
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 6.7e-124 448.0 449 53.2
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 8.7e-124 447.6 438 54.1
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 8.7e-124 447.6 453 54.3
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 8.7e-124 447.6 452 54.2
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.1e-123 447.2 444 55.4
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.1e-123 447.2 444 55.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 1.5e-123 446.8 456 53.9
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.5e-123 446.8 447 53.2
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.5e-123 446.8 446 54.9
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.9e-123 446.4 446 54.7
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 1.9e-123 446.4 447 53.5
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 5.7e-123 444.9 453 53.9
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 5.7e-123 444.9 442 55.4
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.6e-122 443.4 449 53.5
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.1e-122 443.0 455 53.4
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.8e-122 442.6 452 54.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.8e-122 442.6 498 50.6
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.7e-122 442.2 446 52.7
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.8e-122 441.8 450 53.1
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.2e-122 441.4 450 52.9
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 8.2e-122 441.0 450 53.1
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 8.2e-122 441.0 449 52.6
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-121 440.7 443 54.6
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.1e-121 440.7 428 56.1
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.4e-121 440.3 440 53.2
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.4e-121 439.5 449 52.6
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 3.1e-121 439.1 455 52.3
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 4.1e-121 438.7 447 52.8
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 5.3e-121 438.3 446 52.2
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 6.9e-121 438.0 447 52.3
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.2e-120 437.2 439 51.9
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.5e-120 436.8 451 53.0
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.5e-120 436.8 449 52.3
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.6e-120 436.0 443 52.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 3.4e-120 435.6 442 53.2
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.8e-120 434.9 440 56.1
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.8e-120 434.9 440 56.1
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.8e-120 434.9 450 53.6
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 5.8e-120 434.9 495 49.7
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.3e-119 433.7 468 51.7
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.0e-119 431.8 450 52.9
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 1.1e-118 430.6 450 51.8
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 1.1e-118 430.6 451 50.3
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.5e-118 429.5 445 54.4
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 3.2e-118 429.1 449 51.4
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 7.2e-118 427.9 486 51.0
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.7e-117 426.0 336 65.8
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 6.1e-117 424.9 482 49.8
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.0e-116 424.1 419 55.8
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 3.9e-116 422.2 444 54.1
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 5.1e-116 421.8 447 51.7
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.5e-115 420.2 415 54.5
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 5.7e-115 418.3 427 53.4
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 5.7e-115 418.3 438 54.8
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 9.7e-115 417.5 443 53.5
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 4.1e-113 412.1 451 52.3
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.5e-112 410.2 434 52.5
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 5.9e-112 408.3 432 52.3
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 5.0e-111 405.2 450 51.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.1e-110 404.1 420 52.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.6e-109 400.2 463 48.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 7.4e-107 391.3 423 53.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.7e-106 390.2 449 49.0
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.1e-105 385.6 447 48.5
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 9.4e-102 374.4 444 48.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.4e-100 370.5 428 48.8
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-99 367.5 411 50.9
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 2.6e-99 366.3 435 49.2
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.3e-97 358.6 334 54.8
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 7.0e-97 358.2 399 47.1
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.2e-96 357.5 423 50.4
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 3.5e-96 355.9 431 44.3
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 4.5e-96 355.5 405 49.1
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.8e-92 343.6 302 57.6
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.1e-91 340.9 334 54.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.6e-91 339.7 265 67.5
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 2.4e-89 333.2 349 52.4
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 7.2e-86 321.6 418 42.1
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.1e-85 320.1 218 75.7
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.0e-84 317.8 395 47.1
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 2.3e-84 316.6 211 74.9
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.6e-83 313.2 388 45.6
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 9.8e-83 311.2 313 56.2
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 9.8e-83 311.2 207 74.9
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.3e-82 310.8 391 45.0
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.4e-81 306.6 359 49.6
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.2e-80 304.3 424 41.7
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.2e-80 304.3 408 43.6
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.7e-79 300.4 267 59.9
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 6.5e-79 298.5 209 69.9
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 1.9e-78 297.0 352 48.6
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 2.5e-78 296.6 353 46.2
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 5.5e-78 295.4 374 46.3
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 5.5e-78 295.4 354 48.9
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 4.0e-76 289.3 209 68.9
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.6e-72 277.3 326 48.5
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-71 273.9 153 85.0
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.7e-71 273.9 206 63.6
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 5.0e-71 272.3 359 45.4
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 6.1e-69 265.4 154 81.2
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 5.2e-68 262.3 179 72.6
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 9.8e-67 258.1 226 61.5
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 2.7e-64 250.0 149 79.9
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.3e-63 247.7 150 76.0
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 1.1e-62 244.6 602 29.2
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.3e-58 231.1 157 71.3
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 3.1e-52 209.9 118 86.4
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.6e-51 206.8 134 70.9
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 6.4e-50 202.2 264 44.7
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.1e-49 198.7 126 70.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 2.7e-48 196.8 125 72.0
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.6e-48 196.1 127 74.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 4.3e-46 189.5 231 52.8
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.4e-42 175.3 117 70.1
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 5.4e-41 172.6 489 27.4
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 6.6e-39 165.6 279 38.4
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.8e-36 157.5 427 29.5
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 3.1e-36 156.8 84 85.7
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.1e-33 148.3 403 29.8
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-30 136.7 92 69.6
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.3e-30 136.7 92 69.6
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 3.2e-25 120.2 241 35.7
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.2e-25 119.8 100 58.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.5e-22 110.5 215 35.8
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 5.6e-22 109.4 72 72.2
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 2.0e-19 100.9 345 27.2
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 2.7e-16 90.5 94 58.5
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 9.0e-12 75.5 238 29.0
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-11 75.1 43 69.8
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 2.9e-10 70.5 53 62.3
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 1.4e-09 68.2 39 84.6
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 1.9e-09 67.8 53 56.6
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-07 61.6 111 36.0
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-07 61.2 52 53.8


User provided reference genes

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