Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A483T24 Lonicera japonica HOM05D008338 ORTHO05D000921 6.3e-123 444.1 225 100.0
Lj1A366G18 Lonicera japonica HOM05D008338 ORTHO05D000921 3.2e-111 405.2 278 78.1
Lju1319C4G9 Lonicera japonica HOM05D008338 ORTHO05D000921 1.0e-109 400.2 277 77.6
Lj7A726T26 Lonicera japonica HOM05D008338 ORTHO05D000921 2.3e-109 399.1 271 77.9
Lj3A995G65 Lonicera japonica HOM05D008338 ORTHO05D000921 3.1e-85 318.9 268 61.2
Lj5A436T25 Lonicera japonica HOM05D008338 ORTHO05D000921 4.0e-85 318.5 223 74.4
Lj4C727T6 Lonicera japonica HOM05D008338 ORTHO05D000921 5.2e-85 318.2 269 63.2
Lju1040A2T29 Lonicera japonica HOM05D008338 ORTHO05D000921 5.2e-85 318.2 269 63.2
Lj7A99T40 Lonicera japonica HOM05D008338 ORTHO05D000921 2.6e-84 315.8 270 63.0
Lj7A576T77 Lonicera japonica HOM05D008338 ORTHO05D000921 3.6e-70 268.9 241 61.0
Lj7A78G56 Lonicera japonica HOM05D008338 ORTHO05D000921 1.3e-59 233.8 204 61.3
Lj4P771T23 Lonicera japonica HOM05D008338 ORTHO05D000921 9.6e-55 217.6 120 90.8
Lj4A312T9 Lonicera japonica HOM05D008338 ORTHO05D000921 2.8e-54 216.1 176 68.8
Lj5A412T16 Lonicera japonica HOM05D008338 ORTHO05D000921 1.2e-49 200.7 198 56.6
Lj9A689T48 Lonicera japonica HOM05D008338 ORTHO05D000921 2.7e-49 199.5 120 81.7
Lj2A609T18 Lonicera japonica HOM05D008338 ORTHO05D000921 1.9e-47 193.4 198 54.5
Lj4P890T11 Lonicera japonica HOM05D008338 ORTHO05D000921 1.4e-45 187.2 117 82.1
Lj4A464T6 Lonicera japonica HOM05D008338 ORTHO05D000921 4.0e-45 185.7 120 73.3
Lj1A889T103 Lonicera japonica HOM05D008338 ORTHO05D000921 4.3e-39 165.6 159 58.5
Lj1P813T6 Lonicera japonica HOM05D008338 ORTHO05D000921 1.6e-38 163.7 103 77.7
Lj6A736T79 Lonicera japonica HOM05D008338 ORTHO05D000921 2.6e-36 156.4 101 76.2
Lj2A1212T63 Lonicera japonica HOM05D008338 ORTHO05D000921 4.5e-36 155.6 136 61.0
Lj1P822T28 Lonicera japonica HOM05D008338 ORTHO05D000921 2.2e-35 153.3 102 76.5
Lj2A728G9 Lonicera japonica HOM05D008338 ORTHO05D000921 6.5e-35 151.8 158 51.9
Lj7C613T8 Lonicera japonica HOM05D008338 ORTHO05D000921 8.4e-35 151.4 76 96.1
Lj2C925G1 Lonicera japonica HOM05D008338 ORTHO05D000921 1.4e-34 150.6 204 46.6
Lj8A133T59 Lonicera japonica HOM05D008338 ORTHO05D000921 2.5e-34 149.8 203 46.3
Lj1C813T1 Lonicera japonica HOM05D008338 ORTHO05D000921 5.5e-34 148.7 102 75.5
Lj7A451G35 Lonicera japonica HOM05D008338 ORTHO05D000921 7.2e-34 148.3 102 74.5
Lj9P576T20 Lonicera japonica HOM05D008338 ORTHO05D000921 9.3e-34 147.9 100 72.0
Lj2P1171T5 Lonicera japonica HOM05D008338 ORTHO05D000921 1.8e-32 143.7 109 69.7
Lj3C241T0 Lonicera japonica HOM05D008338 ORTHO05D000921 2.3e-32 143.3 104 69.2
Lj3P922T30 Lonicera japonica HOM05D008338 ORTHO05D000921 2.3e-32 143.3 87 81.6
Lj2P419T27 Lonicera japonica HOM05D008338 ORTHO05D000921 1.1e-31 141.0 87 80.5
Lj1A1074G41 Lonicera japonica HOM05D008338 ORTHO05D000921 2.8e-30 136.3 104 66.3
Lj1C236T6 Lonicera japonica HOM05D008338 ORTHO05D000921 6.3e-30 135.2 98 68.4
Lj6P703T80 Lonicera japonica HOM05D008338 ORTHO05D000921 1.4e-29 134.0 135 54.8
Lj7C484G7 Lonicera japonica HOM05D008338 ORTHO05D000921 5.9e-28 128.6 89 75.3
Lj2C391G3 Lonicera japonica HOM05D008338 ORTHO05D000921 5.0e-27 125.6 182 44.5
Lj4A232T45 Lonicera japonica HOM05D008338 ORTHO05D000921 2.0e-23 113.6 65 75.4
Lj7C324T1 Lonicera japonica HOM05D008338 ORTHO05D000921 2.5e-23 113.2 72 80.6
Lj9A361G54 Lonicera japonica HOM05D008338 ORTHO05D000921 9.7e-23 111.3 119 55.5
Lj4C771T8 Lonicera japonica HOM05D008338 ORTHO05D000921 1.7e-22 110.5 82 67.1
Lj7P314T13 Lonicera japonica HOM05D008338 ORTHO05D000921 6.3e-22 108.6 60 86.7
Lj8P612T5 Lonicera japonica HOM05D008338 ORTHO05D000921 5.3e-21 105.5 87 59.8
Lj5C413T5 Lonicera japonica HOM05D008338 ORTHO05D000921 2.6e-20 103.2 137 44.5
Lj7A613T70 Lonicera japonica HOM05D008338 ORTHO05D000921 1.3e-19 100.9 49 95.9
Lju124C35T2 Lonicera japonica HOM05D008338 ORTHO05D000921 8.5e-19 98.2 73 67.1
Lj9C689T11 Lonicera japonica HOM05D008338 ORTHO05D000921 6.1e-17 92.0 50 82.0
Lj7P14T56 Lonicera japonica HOM05D008338 ORTHO05D000921 2.3e-16 90.1 78 60.3
TWI38G2389 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 7.4e-15 85.1 134 38.1
TPR.G10504 Trifolium pratense HOM05D000665 ORTHO05D000921 9.7e-15 84.7 209 30.6
TWI63G0719 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.6e-12 77.4 75 49.3
CANSAT25G2398 Cannabis sativa HOM05D000665 ORTHO05D000921 2.6e-12 76.6 111 33.3
CANSAT54G0360 Cannabis sativa HOM05D000665 ORTHO05D000921 2.6e-12 76.6 120 32.5
Dinv05111 Davidia involucrata HOM05D008473 ORTHO05D000921 2.6e-12 76.6 255 24.7
CANSAT01G0669 Cannabis sativa HOM05D000665 ORTHO05D000921 3.5e-12 76.3 120 32.5
CANSAT35G1351 Cannabis sativa HOM05D000665 ORTHO05D000921 3.5e-12 76.3 120 32.5
CANSAT01G1528 Cannabis sativa HOM05D000665 ORTHO05D000921 2.2e-11 73.6 111 33.3
Ciclev10006620m.g Citrus clementina HOM05D003171 ORTHO05D000921 2.9e-11 73.2 110 35.5
Dinv33374 Davidia involucrata HOM05D008473 ORTHO05D000921 2.9e-11 73.2 144 37.5
Psat5g151680 Pisum sativum HOM05D000665 ORTHO05D000921 2.9e-11 73.2 97 40.2
Psat7g176640 Pisum sativum HOM05D000665 ORTHO05D000921 2.9e-11 73.2 97 40.2
QL01p020889 Quercus lobata HOM05D000665 ORTHO05D000921 2.9e-11 73.2 108 35.2
CSS0048883 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 3.8e-11 72.8 269 22.7
CANSAT80G1832 Cannabis sativa HOM05D000034 ORTHO05D000921 5.0e-11 72.4 111 31.5
Medtr3g065345 Medicago truncatula HOM05D008338 ORTHO05D000921 5.0e-11 72.4 75 45.3
Psat0s94g0040 Pisum sativum HOM05D000665 ORTHO05D000921 5.0e-11 72.4 100 40.0
FvH4_7g00340 Fragaria vesca HOM05D003171 ORTHO05D000921 6.5e-11 72.0 119 34.5
CSS0000387 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 8.5e-11 71.6 108 33.3
CSS0041063 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 8.5e-11 71.6 108 33.3
Psat7g015480 Pisum sativum HOM05D000665 ORTHO05D000921 8.5e-11 71.6 97 39.2
CANSAT54G0727 Cannabis sativa HOM05D007209 ORTHO05D000921 1.5e-10 70.9 272 25.0
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 1.9e-10 70.5 108 36.1
Dinv09638 Davidia involucrata HOM05D008473 ORTHO05D000921 3.2e-10 69.7 98 37.8
Psat7g003000 Pisum sativum HOM05D000665 ORTHO05D000921 7.2e-10 68.6 97 37.1
TPR.G16880 Trifolium pratense HOM05D000665 ORTHO05D000921 7.2e-10 68.6 120 32.5
Ciclev10018241m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.6e-09 67.4 130 33.8
CSS0004715 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.1e-09 67.0 108 31.5
Ciclev10033776m.g Citrus clementina HOM05D003171 ORTHO05D000921 2.1e-09 67.0 103 35.9
CSS0009073 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.7e-09 65.9 113 30.1
Medtr8g085310 Medicago truncatula HOM05D001243 ORTHO05D000843 4.7e-09 65.9 120 30.8
PSO832G2613 Papaver somniferum HOM05D003171 ORTHO05D000921 4.7e-09 65.9 158 27.2
Psat5g276600 Pisum sativum HOM05D003171 ORTHO05D000921 4.7e-09 65.9 62 48.4
TPR.G13935 Trifolium pratense HOM05D000665 ORTHO05D000921 4.7e-09 65.9 120 32.5
CSS0007077 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.0e-08 64.7 99 32.3
CSS0008427 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.0e-08 64.7 108 30.6
CSS0029683 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.0e-08 64.7 108 30.6
Dinv03278 Davidia involucrata HOM05D008473 ORTHO05D000921 1.0e-08 64.7 184 25.5
Prupe.7G061200 Prunus persica HOM05D003171 ORTHO05D000921 1.0e-08 64.7 109 35.8
CANSAT01G1895 Cannabis sativa HOM05D003171 ORTHO05D000921 1.4e-08 64.3 84 33.3
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.4e-08 64.3 119 29.4
Actinidia03712 Actinidia chinensis HOM05D000665 ORTHO05D000921 1.8e-08 63.9 108 30.6
CSS0028686 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.8e-08 63.9 108 30.6
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.3e-08 63.5 118 29.7
TWI36G0176 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 2.3e-08 63.5 46 63.0
Ciclev10028960m.g Citrus clementina HOM05D003171 ORTHO05D000921 3.0e-08 63.2 174 26.4
Dinv29345 Davidia involucrata HOM05D000665 ORTHO05D000921 3.0e-08 63.2 108 30.6
Medtr1g094760 Medicago truncatula HOM05D001243 ORTHO05D000843 3.0e-08 63.2 266 26.3
QL02p005994 Quercus lobata HOM05D000034 ORTHO05D000037 3.0e-08 63.2 227 24.2
GSVIVG01038689001 Vitis vinifera HOM05D000665 ORTHO05D000921 4.0e-08 62.8 83 32.5
CSS0047450 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 6.7e-08 62.0 108 30.6
CANSAT11G0381 Cannabis sativa HOM05D003171 ORTHO05D000921 6.7e-08 62.0 110 32.7
Hma1.2p1_2380F.1_g320966 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 6.7e-08 62.0 108 31.5
CANSAT64G2197 Cannabis sativa HOM05D003171 ORTHO05D000921 8.8e-08 61.6 109 33.0
Haze_19866 Corylus avellana HOM05D001129 ORTHO05D022266 8.8e-08 61.6 191 28.8
PGR031G0833 Punica granatum HOM05D003171 ORTHO05D000921 8.8e-08 61.6 146 31.5
CSS0049933 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.1e-07 61.2 99 30.3
TWI34G0686 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 1.1e-07 61.2 46 58.7
CANSAT64G1510 Cannabis sativa HOM05D000665 ORTHO05D000140 1.5e-07 60.8 112 30.4
Ciclev10010650m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.5e-07 60.8 219 22.8
Dinv12070 Davidia involucrata HOM05D008473 ORTHO05D000921 1.5e-07 60.8 99 31.3
Prupe.8G054800 Prunus persica HOM05D003171 ORTHO05D000921 1.5e-07 60.8 101 35.6
Hma1.2p1_1786F.1_g302300 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 2.0e-07 60.5 108 31.5
Medtr4g051480 Medicago truncatula HOM05D001243 ORTHO05D000843 2.0e-07 60.5 120 30.0
Medtr4g092300 Medicago truncatula HOM05D001243 ORTHO05D000843 2.0e-07 60.5 120 30.0
PGR119G0096 Punica granatum HOM05D003171 ORTHO05D000921 2.0e-07 60.5 109 31.2
CSS0031995 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 2.6e-07 60.1 126 31.0
PGR044G0862 Punica granatum HOM05D003171 ORTHO05D000921 2.6e-07 60.1 146 30.8
PGR102G1953 Punica granatum HOM05D003171 ORTHO05D000921 2.6e-07 60.1 146 30.8
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.6e-07 60.1 115 28.7
AUR62040593 Chenopodium quinoa HOM05D007209 ORTHO05D000921 4.4e-07 59.3 108 29.6
PGR119G2496 Punica granatum HOM05D003171 ORTHO05D000921 4.4e-07 59.3 109 30.3
PGR142G0886 Punica granatum HOM05D003171 ORTHO05D000921 4.4e-07 59.3 109 30.3
CANSAT54G2744 Cannabis sativa HOM05D003171 ORTHO05D000921 5.7e-07 58.9 144 29.2
FAN10G0150 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.7e-07 58.9 238 26.1
Psat0s3985g0040 Pisum sativum HOM05D000665 ORTHO05D000140 5.7e-07 58.9 110 28.2
Nn1g02527 Nelumbo nucifera HOM05D000665 ORTHO05D000921 7.5e-07 58.5 173 26.6
PGR042G0470 Punica granatum HOM05D003171 ORTHO05D000921 7.5e-07 58.5 146 30.1
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 7.5e-07 58.5 108 30.6
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 7.5e-07 58.5 108 30.6
CSS0007117 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 9.7e-07 58.2 121 30.6
MBI04_g27247_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000285 9.7e-07 58.2 108 30.6
Nn2g14028 Nelumbo nucifera HOM05D000665 ORTHO05D000140 9.7e-07 58.2 109 26.6
PGR031G1004 Punica granatum HOM05D003171 ORTHO05D000921 9.7e-07 58.2 146 30.8
A02p24550 Brassica napus HOM05D000665 ORTHO05D000140 1.3e-06 57.8 112 28.6
PGR044G1317 Punica granatum HOM05D003171 ORTHO05D000921 1.3e-06 57.8 109 30.3
PGR119G0399 Punica granatum HOM05D003171 ORTHO05D000921 1.3e-06 57.8 146 30.1
TAR555G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 1.3e-06 57.8 127 33.9
PGR142G0920 Punica granatum HOM05D003171 ORTHO05D000921 1.7e-06 57.4 109 29.4
TPR.G21227 Trifolium pratense HOM05D000665 ORTHO05D000140 1.7e-06 57.4 110 24.5
CANSAT25G0660 Cannabis sativa HOM05D000665 ORTHO05D000921 2.2e-06 57.0 250 24.4
Medtr1g055365 Medicago truncatula HOM05D000665 ORTHO05D000140 2.2e-06 57.0 110 25.5
QL07p023043 Quercus lobata HOM05D003171 ORTHO05D000921 2.2e-06 57.0 108 30.6
BraA02t07447Z Brassica rapa HOM05D000665 ORTHO05D000140 2.8e-06 56.6 112 27.7
Lj5A414T29 Lonicera japonica HOM05D008338 ORTHO05D000921 2.8e-06 56.6 122 33.6
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 2.8e-06 56.6 138 26.8
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-06 56.6 108 31.5
QL10p052222 Quercus lobata HOM05D003171 ORTHO05D000921 2.8e-06 56.6 109 32.1
Thecc.05G108300 Theobroma cacao HOM05D000665 ORTHO05D000140 2.8e-06 56.6 112 29.5
TAR626G0805 Trochodendron aralioides HOM05D000665 ORTHO05D000285 2.8e-06 56.6 109 31.2
CSS0041232 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 3.7e-06 56.2 82 34.1
PGR004G0383 Punica granatum HOM05D003171 ORTHO05D000921 3.7e-06 56.2 146 30.1
PGR042G0219 Punica granatum HOM05D003171 ORTHO05D000921 3.7e-06 56.2 146 29.5
PGR102G1972 Punica granatum HOM05D003171 ORTHO05D000921 3.7e-06 56.2 109 32.1
Sabra17G0100000 Salix brachista HOM05D003171 ORTHO05D000921 3.7e-06 56.2 110 32.7
Sabra17G0103300 Salix brachista HOM05D003171 ORTHO05D000921 3.7e-06 56.2 110 32.7
THA.LOC104819951 Tarenaya hassleriana HOM05D000665 ORTHO05D000140 3.7e-06 56.2 108 28.7
Thhalv10000052m.g Eutrema salsugineum HOM05D000665 ORTHO05D000140 4.8e-06 55.8 108 29.6
Hma1.2p1_0969F.1_g242610 Hydrangea macrophylla HOM05D000665 ORTHO05D000140 4.8e-06 55.8 109 23.9
RcHm_v2.0_Chr5g0052631 Rosa chinensis HOM05D001678 ORTHO05D001698 4.8e-06 55.8 127 32.3
Nn3g16139 Nelumbo nucifera HOM05D000665 ORTHO05D000285 6.3e-06 55.5 111 27.9
Nn3g20404 Nelumbo nucifera HOM05D000665 ORTHO05D000285 6.3e-06 55.5 111 27.9
Nn8g38574 Nelumbo nucifera HOM05D000034 ORTHO05D000285 6.3e-06 55.5 96 33.3
Potri.017G120900 Populus trichocarpa HOM05D003171 ORTHO05D000921 6.3e-06 55.5 110 32.7
QL01p028137 Quercus lobata HOM05D000876 ORTHO05D000285 6.3e-06 55.5 101 32.7
QL02p030443 Quercus lobata HOM05D000876 ORTHO05D000285 6.3e-06 55.5 101 32.7
QL04p036904 Quercus lobata HOM05D000876 ORTHO05D000285 6.3e-06 55.5 101 32.7
QL09p002249 Quercus lobata HOM05D000876 ORTHO05D000285 6.3e-06 55.5 101 32.7
QL10p040122 Quercus lobata HOM05D000876 ORTHO05D000285 6.3e-06 55.5 101 32.7
Rhsim02G0174500 Rhododendron simsii HOM05D021294 ORTHO05D000921 6.3e-06 55.5 217 27.2
arahy.Tifrunner.gnm1.ann1.0EBI7C Arachis hypogaea HOM05D000665 ORTHO05D000140 8.2e-06 55.1 110 25.5


User provided reference genes

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