Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 2.1e-280 968.4 497 100.0
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 1.7e-197 693.0 513 73.1
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 3.3e-188 662.1 484 74.0
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.6e-187 659.8 474 75.1
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 5.7e-185 651.4 513 68.0
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 2.9e-184 649.0 521 68.7
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 3.7e-184 648.7 503 69.6
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 1.3e-181 640.2 513 68.0
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 3.9e-181 638.6 503 68.8
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.5e-180 636.7 491 70.1
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 6.2e-179 631.3 499 68.3
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 1.0e-178 630.6 513 67.4
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 5.8e-177 624.8 519 65.7
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 9.8e-177 624.0 522 64.6
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 1.7e-176 623.2 495 67.9
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.7e-176 622.1 503 65.8
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 6.4e-176 621.3 520 64.2
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.9e-175 619.8 513 64.5
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.2e-174 617.1 513 64.3
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 1.6e-174 616.7 503 65.8
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 6.0e-174 614.8 513 66.3
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.7e-173 613.2 515 64.3
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 3.9e-173 612.1 503 63.8
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 5.0e-173 611.7 513 64.3
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 5.0e-173 611.7 512 65.6
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.5e-172 610.1 513 64.3
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 1.9e-172 609.8 604 57.9
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 1.9e-172 609.8 513 65.7
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 7.3e-172 607.8 512 64.6
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 2.8e-171 605.9 522 63.0
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 4.7e-171 605.1 548 60.8
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 2.3e-170 602.8 513 63.0
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 2.3e-170 602.8 513 63.7
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 3.1e-170 602.4 512 63.1
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 5.2e-170 601.7 513 64.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.2e-169 600.5 512 64.5
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 2.0e-169 599.7 503 65.2
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 5.8e-169 598.2 512 64.3
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.7e-168 596.7 516 63.4
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 3.7e-168 595.5 512 63.7
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 4.9e-168 595.1 503 63.6
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 8.3e-168 594.3 513 64.9
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.3e-168 594.3 474 68.6
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.3e-168 594.3 474 68.6
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.3e-168 594.3 513 64.9
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 2.4e-167 592.8 503 62.2
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.2e-166 590.5 513 64.7
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.1e-166 589.7 513 64.3
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 3.5e-166 589.0 513 62.4
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 4.6e-166 588.6 519 61.5
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 1.3e-165 587.0 502 63.3
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 3.0e-165 585.9 513 63.0
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 6.6e-165 584.7 513 62.8
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 2.5e-164 582.8 503 62.4
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 2.5e-164 582.8 502 62.5
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 7.3e-164 581.3 513 62.2
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 2.1e-163 579.7 515 59.6
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 3.6e-163 578.9 513 61.2
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 4.0e-162 575.5 503 62.2
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 1.2e-161 573.9 515 59.0
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 9.9e-161 570.9 513 61.4
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 1.3e-160 570.5 503 62.0
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.9e-160 569.3 513 62.4
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 1.1e-159 567.4 513 60.4
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 6.0e-158 561.6 464 63.6
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 6.6e-157 558.1 503 61.4
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 5.6e-156 555.1 404 72.0
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 3.1e-154 549.3 512 59.4
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 4.0e-154 548.9 509 59.5
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.5e-153 547.0 503 60.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 2.0e-153 546.6 513 59.6
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 2.2e-152 543.1 503 60.0
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 5.4e-151 538.5 464 62.9
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 5.4e-151 538.5 506 60.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 6.0e-150 535.0 503 59.0
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 1.0e-149 534.3 503 59.6
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 8.7e-149 531.2 504 60.1
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 8.7e-149 531.2 504 60.1
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.5e-148 530.4 504 59.9
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.5e-148 530.4 503 58.6
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 2.5e-148 529.6 503 59.0
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.1e-147 526.6 504 59.7
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 2.1e-147 526.6 425 66.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.1e-146 524.2 514 57.6
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 2.4e-146 523.1 522 57.9
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 3.1e-146 522.7 502 57.2
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 9.9e-145 517.7 507 57.8
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.3e-144 517.3 503 58.1
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 1.3e-144 517.3 503 57.1
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.4e-144 515.0 509 58.2
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.4e-144 515.0 509 58.2
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.8e-139 499.6 503 53.5
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 5.1e-133 478.8 502 53.0
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 3.2e-119 433.0 353 63.7
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.5e-116 424.1 464 53.0
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.1e-114 416.4 502 48.2
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 3.8e-112 409.5 389 60.4
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 4.7e-102 375.9 466 48.9
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.8e-101 374.0 507 44.4
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 4.5e-97 359.4 465 46.5
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 2.8e-91 340.1 198 86.4
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 3.7e-91 339.7 207 80.2
Lsat_1_v5_gn_3_136501 Lactuca sativa HOM05D003193 ORTHO05D004924 1.1e-87 328.2 208 76.0
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 4.2e-87 326.2 376 51.3
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 4.2e-87 326.2 504 42.3
Lsat_1_v5_gn_7_43461 Lactuca sativa HOM05D003193 ORTHO05D004924 4.4e-84 316.2 198 76.8
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 9.8e-84 315.1 511 39.5
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 2.0e-76 290.8 477 38.6
Lsat_1_v5_gn_8_84401 Lactuca sativa HOM05D003193 ORTHO05D004924 6.4e-67 259.2 179 70.4
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 5.4e-66 256.1 161 78.9
Psat2g117360 Pisum sativum HOM05D003193 ORTHO05D004924 1.6e-62 244.6 160 76.9
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 1.2e-54 218.4 125 88.0
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 3.1e-53 213.8 269 47.2
MD04G1233900 Malus domestica HOM05D003193 ORTHO05D004924 5.6e-47 193.0 180 60.0
Lsat_1_v5_gn_2_9720 Lactuca sativa HOM05D003193 ORTHO05D004924 3.6e-46 190.3 122 76.2
Actinidia06820 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.1e-45 187.2 166 63.9
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 5.2e-45 186.4 330 41.2
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 3.2e-42 177.2 138 64.5
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 3.2e-42 177.2 138 64.5
SEGI_11076 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.6e-41 174.9 220 45.9
Hund17244 Selenicereus undatus HOM05D003193 ORTHO05D006083 4.0e-37 160.2 110 73.6
Actinidia26097 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.1e-34 152.1 94 84.0
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 3.3e-31 140.6 165 49.7
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 1.6e-30 138.3 165 52.1
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 5.3e-29 133.3 315 36.8
Psat2g117520 Pisum sativum HOM05D003193 ORTHO05D023087 1.6e-22 111.7 70 70.0
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 8.1e-22 109.4 165 44.2
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 5.3e-21 106.7 511 24.5
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 3.4e-20 104.0 153 45.8
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 7.1e-18 96.3 402 28.9
Oeu049759.1 Olea europaea HOM05D000203 ORTHO05D000135 3.7e-14 84.0 72 58.3
Lsat_1_v5_gn_8_118300 Lactuca sativa HOM05D003193 ORTHO05D002149 1.4e-13 82.0 66 59.1
Actinidia06819 Actinidia chinensis HOM05D003193 ORTHO05D026302 7.6e-12 76.3 69 56.5
RcHm_v2.0_Chr4g0419431 Rosa chinensis HOM05D000001 ORTHO05D000003 1.6e-09 68.6 57 64.9
Lsat_1_v5_gn_6_66841 Lactuca sativa HOM05D003193 ORTHO05D228868 1.3e-08 65.5 79 49.4
RcHm_v2.0_Chr6g0282721 Rosa chinensis HOM05D003193 ORTHO05D023087 1.6e-06 58.5 38 73.7


User provided reference genes

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