Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 4.0e-79 298.1 162 100.0
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 2.1e-56 222.6 151 78.8
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 2.1e-56 222.6 146 77.4
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 1.4e-55 219.9 150 77.3
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 1.8e-55 219.5 150 76.7
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 1.3e-53 213.4 151 76.8
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.3e-53 213.4 163 70.6
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 1.3e-53 213.4 147 74.8
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 2.2e-53 212.6 150 73.3
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 5.0e-53 211.5 151 74.8
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 1.4e-52 209.9 151 72.8
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.4e-52 209.9 149 73.2
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.9e-52 209.5 151 73.5
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 2.5e-52 209.1 146 76.0
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.5e-52 209.1 157 70.1
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 4.2e-52 208.4 151 72.8
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 4.2e-52 208.4 148 73.0
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 7.2e-52 207.6 151 69.5
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 9.3e-52 207.2 151 73.5
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 9.3e-52 207.2 148 73.6
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 9.3e-52 207.2 146 75.3
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.2e-51 206.8 146 74.0
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 1.2e-51 206.8 149 73.2
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 1.6e-51 206.5 149 73.2
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 2.1e-51 206.1 147 72.1
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 2.1e-51 206.1 147 72.1
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 2.1e-51 206.1 151 72.2
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 2.7e-51 205.7 147 72.1
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 2.7e-51 205.7 151 72.8
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 3.5e-51 205.3 149 73.8
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 4.6e-51 204.9 149 73.8
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 4.6e-51 204.9 138 76.8
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 4.6e-51 204.9 148 72.3
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 6.1e-51 204.5 148 72.3
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 6.1e-51 204.5 151 71.5
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 7.9e-51 204.1 151 71.5
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 1.3e-50 203.4 149 69.8
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.3e-50 203.4 146 71.9
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 1.8e-50 203.0 149 71.1
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.8e-50 203.0 151 73.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 3.9e-50 201.8 149 70.5
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 6.7e-50 201.1 148 68.9
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 6.7e-50 201.1 149 68.5
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 6.7e-50 201.1 150 71.3
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 8.7e-50 200.7 149 68.5
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 1.1e-49 200.3 149 69.1
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.5e-49 199.9 151 71.5
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 1.5e-49 199.9 150 70.7
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 2.5e-49 199.1 149 70.5
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 2.5e-49 199.1 166 65.1
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 3.3e-49 198.7 149 69.1
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 3.3e-49 198.7 149 69.1
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 3.3e-49 198.7 149 67.1
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 3.3e-49 198.7 151 72.8
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 3.3e-49 198.7 148 69.6
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 4.3e-49 198.4 147 70.7
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 5.7e-49 198.0 149 69.1
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 9.7e-49 197.2 150 68.0
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.6e-48 196.4 150 68.0
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 2.2e-48 196.1 147 70.7
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 2.2e-48 196.1 146 68.5
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 2.8e-48 195.7 148 68.2
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 3.7e-48 195.3 150 71.3
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 3.7e-48 195.3 148 67.6
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 3.7e-48 195.3 149 70.5
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 6.3e-48 194.5 149 67.8
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 6.3e-48 194.5 147 71.4
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 8.2e-48 194.1 147 72.8
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.4e-47 193.4 146 69.9
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 4.1e-47 191.8 149 69.1
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 5.3e-47 191.4 144 69.4
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.0e-46 189.5 146 68.5
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 2.6e-46 189.1 151 66.2
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 5.9e-46 188.0 150 66.0
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 5.9e-46 188.0 150 66.0
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 1.7e-45 186.4 146 68.5
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 8.5e-45 184.1 149 65.1
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 8.5e-45 184.1 180 58.9
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 2.5e-44 182.6 191 56.5
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 5.7e-41 171.4 170 59.4
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 1.3e-40 170.2 131 68.7
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 5.3e-39 164.9 115 71.3
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.0e-38 162.9 120 70.0
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 2.6e-38 162.5 147 61.9
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.5e-38 161.8 123 69.1
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 4.5e-38 161.8 133 60.2
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 5.9e-38 161.4 123 68.3
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 5.9e-38 161.4 123 68.3
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.3e-37 160.2 121 71.1
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 1.7e-37 159.8 151 59.6
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 2.2e-37 159.5 123 69.1
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 2.9e-37 159.1 114 71.9
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.0e-37 158.3 125 66.4
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 2.5e-36 156.0 121 71.9
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 2.1e-35 152.9 146 54.8
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.0e-34 150.6 116 69.0
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 2.3e-34 149.4 146 55.5
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.3e-33 145.6 114 65.8
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 4.4e-33 145.2 146 56.8
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 2.2e-32 142.9 120 62.5
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.1e-31 140.6 116 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 2.9e-29 132.5 148 50.7
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 5.5e-28 128.3 127 52.0
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 7.5e-25 117.9 97 66.0
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 1.4e-23 113.6 83 71.1
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 7.0e-23 111.3 144 44.4
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 6.1e-19 98.2 144 40.3
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 6.5e-13 78.2 147 39.5
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 4.7e-11 72.0 50 70.0
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 4.7e-11 72.0 50 70.0
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 4.9e-08 62.0 117 37.6
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 5.4e-07 58.5 54 53.7


User provided reference genes

Program Settings