Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 4.0e-78 294.7 147 100.0
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 4.5e-45 184.9 143 70.6
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 4.5e-45 184.9 143 70.6
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 5.9e-45 184.5 143 67.1
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 1.0e-44 183.7 143 66.4
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 2.2e-44 182.6 143 66.4
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 3.8e-44 181.8 143 67.1
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 6.5e-44 181.0 140 66.4
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 8.5e-44 180.6 143 69.2
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.1e-43 180.3 143 65.0
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 1.1e-43 180.3 143 65.7
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 1.4e-43 179.9 146 67.1
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.5e-43 179.1 143 65.7
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 5.5e-43 177.9 143 66.4
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 5.5e-43 177.9 151 63.6
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 7.2e-43 177.6 143 65.0
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 1.2e-42 176.8 136 64.7
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 1.6e-42 176.4 143 64.3
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.7e-42 175.6 143 67.1
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 2.7e-42 175.6 134 67.2
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 2.7e-42 175.6 146 66.4
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.7e-42 175.6 143 61.5
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 3.6e-42 175.3 143 65.0
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.6e-42 175.3 143 65.7
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 3.6e-42 175.3 143 64.3
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 4.7e-42 174.9 143 63.6
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.7e-42 174.9 143 67.8
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 6.1e-42 174.5 145 62.8
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 6.1e-42 174.5 139 64.0
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 6.1e-42 174.5 143 66.4
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 8.0e-42 174.1 132 70.5
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 8.0e-42 174.1 143 65.7
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.0e-41 173.7 143 65.7
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.4e-41 173.3 143 65.7
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.8e-41 172.9 141 66.7
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 1.8e-41 172.9 143 64.3
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.8e-41 172.9 144 63.9
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 2.3e-41 172.6 139 64.7
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 3.0e-41 172.2 146 62.3
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 3.0e-41 172.2 143 63.6
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 3.0e-41 172.2 143 65.0
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 3.9e-41 171.8 137 64.2
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 5.2e-41 171.4 147 64.6
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 6.7e-41 171.0 143 63.6
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 8.8e-41 170.6 165 57.0
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.1e-40 170.2 143 63.6
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.1e-40 170.2 134 67.2
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 2.0e-40 169.5 138 65.9
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 2.0e-40 169.5 137 62.8
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.6e-40 169.1 138 63.8
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 3.3e-40 168.7 146 61.0
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 4.4e-40 168.3 133 65.4
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 5.7e-40 167.9 132 64.4
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 5.7e-40 167.9 137 62.0
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 5.7e-40 167.9 138 62.3
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 5.7e-40 167.9 137 65.0
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 7.4e-40 167.5 143 62.2
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 9.7e-40 167.2 137 62.0
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 9.7e-40 167.2 134 65.7
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.3e-39 166.8 137 63.5
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.7e-39 166.4 143 60.8
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.7e-39 166.4 140 64.3
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 2.2e-39 166.0 137 61.3
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 2.2e-39 166.0 148 58.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 2.2e-39 166.0 140 62.1
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 2.2e-39 166.0 143 62.2
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 2.8e-39 165.6 137 62.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 6.3e-39 164.5 135 64.4
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 8.2e-39 164.1 138 63.0
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 8.2e-39 164.1 142 63.4
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 1.4e-38 163.3 137 59.9
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 1.4e-38 163.3 130 64.6
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-38 162.9 137 59.1
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 1.8e-38 162.9 137 59.1
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 2.4e-38 162.5 137 60.6
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 2.4e-38 162.5 143 62.9
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 2.4e-38 162.5 143 60.1
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 4.1e-38 161.8 141 59.6
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 5.3e-38 161.4 143 60.1
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 7.0e-38 161.0 136 59.6
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 9.1e-38 160.6 140 60.0
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.6e-37 159.8 136 58.8
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.6e-37 159.8 126 62.7
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 2.0e-37 159.5 134 63.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.6e-37 159.1 145 62.8
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 4.5e-37 158.3 143 57.3
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.9e-37 157.9 141 56.7
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.7e-36 156.4 132 59.1
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 2.2e-36 156.0 143 55.9
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 2.2e-36 156.0 147 58.5
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 2.9e-36 155.6 127 63.0
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 5.0e-36 154.8 142 61.3
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 6.5e-36 154.5 142 61.3
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.1e-35 153.7 143 56.6
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-35 153.3 176 52.3
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.5e-35 153.3 138 58.7
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 1.9e-35 152.9 126 63.5
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 1.9e-35 152.9 130 56.9
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.5e-35 152.5 144 55.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 9.4e-35 150.6 139 54.7
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 9.4e-35 150.6 130 56.9
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.2e-34 150.2 139 55.4
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.2e-34 150.2 142 57.7
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.6e-34 149.8 156 53.2
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.6e-34 149.8 143 55.2
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 2.7e-34 149.1 143 54.5
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 2.7e-34 149.1 130 59.2
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 3.6e-34 148.7 139 54.7
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 4.7e-34 148.3 126 61.9
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 8.0e-34 147.5 128 62.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.3e-33 146.0 143 55.9
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 4.0e-33 145.2 188 46.8
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 5.2e-33 144.8 129 56.6
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 5.2e-33 144.8 130 55.4
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 6.7e-33 144.4 130 56.9
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 8.8e-33 144.1 143 53.8
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 2.6e-32 142.5 143 55.2
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 4.4e-32 141.7 126 58.7
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.7e-32 141.4 130 55.4
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 5.7e-32 141.4 130 55.4
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 9.7e-32 140.6 139 55.4
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 6.3e-31 137.9 144 59.0
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 8.2e-31 137.5 120 59.2
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 2.4e-30 136.0 139 52.5
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 7.0e-30 134.4 110 67.3
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 3.8e-28 128.6 143 52.4
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 9.4e-27 124.0 106 57.5
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 9.4e-27 124.0 70 84.3
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.0e-25 118.6 70 82.9
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 3.4e-24 115.5 142 48.6
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 4.4e-24 115.2 106 57.5
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 7.5e-24 114.4 70 80.0
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 2.8e-23 112.5 105 55.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 3.7e-23 112.1 130 46.9
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 6.3e-23 111.3 70 72.9
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-22 109.8 139 49.6
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 1.7e-20 103.2 67 74.6
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.6e-18 95.5 108 49.1
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.8e-17 93.2 67 68.7
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.8e-17 93.2 93 54.8
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 2.6e-16 89.4 134 37.3
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.7e-16 88.2 53 83.0
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 5.7e-16 88.2 56 75.0
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 7.5e-16 87.8 143 40.6
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.3e-15 87.0 130 40.0
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-14 83.2 53 71.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.8e-14 83.2 53 71.7
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.5e-13 78.6 52 71.2
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 5.0e-12 75.1 45 77.8
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 1.5e-11 73.6 55 70.9
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 5.6e-11 71.6 52 65.4
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 1.0e-09 67.4 46 69.6
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 5.8e-08 61.6 126 31.7
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 3.2e-06 55.8 157 26.8


User provided reference genes

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