Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A414T28 Lonicera japonica HOM05D007528 ORTHO05D008503 7.6e-138 493.8 248 100.0
Dinv14550 Davidia involucrata HOM05D007528 ORTHO05D008503 4.6e-82 308.5 268 61.2
CSS0027135 Camellia sinensis var. sinensis HOM05D007528 ORTHO05D008503 3.9e-81 305.4 230 65.7
Cc06_g21080 Coffea canephora HOM05D007528 ORTHO05D008503 6.4e-76 288.1 258 59.3
vmacro12911 Vaccinium macrocarpon HOM05D007528 ORTHO05D008503 1.9e-75 286.6 188 70.2
TAR623G0014 Trochodendron aralioides HOM05D007528 ORTHO05D008503 3.2e-75 285.8 214 63.6
QL11p009983 Quercus lobata HOM05D007528 ORTHO05D008503 9.2e-75 284.3 195 66.2
Oeu032951.1 Olea europaea HOM05D007528 ORTHO05D008503 7.8e-74 281.2 175 72.6
Thecc.05G128400 Theobroma cacao HOM05D007528 ORTHO05D008503 1.7e-73 280.0 195 66.2
Manes.09G073900 Manihot esculenta HOM05D007528 ORTHO05D008503 2.3e-73 279.6 191 67.5
DCAR_013508 Daucus carota HOM05D007528 ORTHO05D008503 1.1e-72 277.3 205 64.4
GSVIVG01025860001 Vitis vinifera HOM05D007528 ORTHO05D008503 1.1e-72 277.3 255 57.6
Duzib093G0275 Durio zibethinus HOM05D007528 ORTHO05D008503 4.3e-72 275.4 194 64.9
Gorai.002G231000 Gossypium raimondii HOM05D007528 ORTHO05D008503 4.7e-71 271.9 210 62.4
Gohir.D01G187600 Gossypium hirsutum HOM05D007528 ORTHO05D008503 8.1e-71 271.2 210 61.9
MSTRG.19743 Avicennia marina HOM05D007528 ORTHO05D008503 1.1e-70 270.8 245 56.3
SalBow6G5282 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.1e-70 270.8 198 66.7
SalBow6G5858 Salvia bowleyana HOM05D007528 ORTHO05D008503 1.1e-70 270.8 198 66.7
Lsat_1_v5_gn_8_83941 Lactuca sativa HOM05D007528 ORTHO05D008503 3.1e-70 269.2 176 67.0
Gohir.A01G197400 Gossypium hirsutum HOM05D007528 ORTHO05D008503 6.8e-70 268.1 229 57.6
Eucgr.A02169 Eucalyptus grandis HOM05D007528 ORTHO05D008503 1.5e-69 266.9 189 65.6
COL.COLO4_08087 Corchorus olitorius HOM05D007528 ORTHO05D008503 2.6e-69 266.2 207 60.4
Phvul.001G109000 Phaseolus vulgaris HOM05D007528 ORTHO05D008503 3.4e-69 265.8 245 58.0
TWI63G0885 Tripterygium wilfordii HOM05D007528 ORTHO05D008503 3.4e-69 265.8 189 64.0
arahy.Tifrunner.gnm1.ann1.ARK2IX Arachis hypogaea HOM05D007528 ORTHO05D008503 5.8e-69 265.0 247 54.7
arahy.Tifrunner.gnm1.ann1.ZMQ31P Arachis hypogaea HOM05D007528 ORTHO05D008503 5.8e-69 265.0 175 66.3
HanXRQChr04g0125621 Helianthus annuus HOM05D007528 ORTHO05D008503 7.5e-69 264.6 247 56.3
Medtr7g088210 Medicago truncatula HOM05D007528 ORTHO05D008503 1.7e-68 263.5 218 61.0
Haze_09241 Corylus avellana HOM05D007528 ORTHO05D006305 2.2e-68 263.1 201 60.2
ECA236G1579 Erigeron canadensis HOM05D007528 ORTHO05D008503 2.9e-68 262.7 175 66.3
Lj1g0006388 Lotus japonicus HOM05D007528 ORTHO05D008503 2.9e-68 262.7 197 62.9
MBI13_g02396_MAGBIO Magnolia biondii HOM05D007528 ORTHO05D008503 3.7e-68 262.3 248 56.5
PGSC0003DMG400019757 Solanum tuberosum HOM05D007528 ORTHO05D008503 3.7e-68 262.3 241 55.6
Lalb_Chr22g0358311 Lupinus albus HOM05D007528 ORTHO05D008503 4.9e-68 261.9 237 54.4
Nitab4.5_0000382g0060 Nicotiana tabacum HOM05D007528 ORTHO05D008503 4.9e-68 261.9 226 57.1
Psat3g082960 Pisum sativum HOM05D007528 ORTHO05D008503 4.9e-68 261.9 242 55.4
TPR.G23704 Trifolium pratense HOM05D007528 ORTHO05D008503 1.4e-67 260.4 174 67.2
Ciclev10012580m.g Citrus clementina HOM05D007528 ORTHO05D008503 1.9e-67 260.0 230 59.1
Cpa.g.sc33.188 Carica papaya HOM05D007528 ORTHO05D008503 3.2e-67 259.2 239 56.9
Ca_08340_v3 Cicer arietinum L. HOM05D007528 ORTHO05D008503 1.2e-66 257.3 252 53.6
PGR042G1749 Punica granatum HOM05D007528 ORTHO05D008503 1.2e-66 257.3 225 57.3
RcHm_v2.0_Chr3g0495771 Rosa chinensis HOM05D007528 ORTHO05D008503 3.5e-66 255.8 236 57.2
Migut.J01598 Erythranthe guttata HOM05D007528 ORTHO05D008503 4.6e-66 255.4 246 56.1
Glyma.19G123400 Glycine max HOM05D007528 ORTHO05D008503 1.0e-65 254.2 171 67.8
Peaxi162Scf00183g00712 Petunia axillaris HOM05D007528 ORTHO05D008503 1.7e-65 253.4 239 52.7
FvH4_1g29750 Fragaria vesca HOM05D007528 ORTHO05D008503 3.9e-65 252.3 244 55.3
CANSAT21G0864 Cannabis sativa HOM05D007528 ORTHO05D008503 6.6e-65 251.5 194 60.8
FAN28G2175 Fragaria x ananassa HOM05D007528 ORTHO05D008503 6.6e-65 251.5 244 55.3
CDE04G0261 Ceratophyllum demersum HOM05D007528 ORTHO05D008503 1.5e-64 250.4 193 56.0
PSO729G0248 Papaver somniferum HOM05D007528 ORTHO05D008503 1.5e-64 250.4 196 59.7
Atru.chr8.936 Acer truncatum HOM05D007528 ORTHO05D008503 1.9e-64 250.0 233 55.8
FAN26G0883 Fragaria x ananassa HOM05D007528 ORTHO05D008503 1.9e-64 250.0 244 54.9
Sabra06G0018500 Salix brachista HOM05D007528 ORTHO05D008503 1.9e-64 250.0 169 66.9
Aqoxy2G00067 Aquilegia oxysepala HOM05D007528 ORTHO05D008503 9.5e-64 247.7 250 52.4
MD12G1013500 Malus domestica HOM05D007528 ORTHO05D008503 1.2e-63 247.3 200 63.5
Solyc03g044630.2 Solanum lycopersicum HOM05D007528 ORTHO05D008503 1.2e-63 247.3 239 52.3
Potri.006G025200 Populus trichocarpa HOM05D007528 ORTHO05D008503 3.6e-63 245.7 246 50.4
THA.LOC104803254 Tarenaya hassleriana HOM05D007528 ORTHO05D008503 3.6e-63 245.7 202 57.4
Nn7g37298 Nelumbo nucifera HOM05D007528 ORTHO05D008503 4.7e-63 245.4 231 53.2
EL10Ac5g11614 Beta vulgaris HOM05D007528 ORTHO05D008503 9.9e-61 237.7 204 57.4
ATR0307G122 Amborella trichopoda HOM05D007528 ORTHO05D008503 1.7e-60 236.9 202 56.4
BraA04t18594Z Brassica rapa HOM05D007528 ORTHO05D008503 1.7e-60 236.9 240 54.2
Carub.0004s2343 Capsella rubella HOM05D007528 ORTHO05D008503 2.2e-60 236.5 196 56.6
Sed0015046 Sechium edule HOM05D007528 ORTHO05D008503 2.2e-60 236.5 197 57.9
A04p31360 Brassica napus HOM05D007528 ORTHO05D008503 4.9e-60 235.3 246 53.3
Thhalv10017145m.g Eutrema salsugineum HOM05D007528 ORTHO05D008503 6.4e-60 235.0 175 61.7
AL4G39090 Arabidopsis lyrata HOM05D007528 ORTHO05D008503 1.4e-59 233.8 248 50.4
AT2G41120 Arabidopsis thaliana HOM05D007528 ORTHO05D008503 1.4e-59 233.8 249 49.8
Sp4g23430 Schrenkiella parvula HOM05D007528 ORTHO05D008503 1.9e-59 233.4 199 55.8
ClCG10G016790 Citrullus lanatus HOM05D007528 ORTHO05D008503 5.4e-59 231.9 173 61.8
BolC4t28382H Brassica oleracea HOM05D007528 ORTHO05D008503 3.5e-58 229.2 238 51.7
C04p68770 Brassica napus HOM05D007528 ORTHO05D008503 4.6e-58 228.8 238 51.7
Aa31LG3G960 Aethionema arabicum HOM05D007528 ORTHO05D008503 3.9e-57 225.7 208 54.8
CsaV3_3G039560 Cucumis sativus L. HOM05D007528 ORTHO05D008503 3.3e-56 222.6 247 48.2
SEGI_20851 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 2.8e-55 219.5 215 51.6
BcaNung05626 Brassica carinata HOM05D007528 ORTHO05D008503 6.2e-55 218.4 240 51.2
Mapoly0168s0009 Marchantia polymorpha HOM05D007528 ORTHO05D008503 6.9e-54 214.9 177 55.9
Rhsim10G0151800 Rhododendron simsii HOM05D007528 ORTHO05D008503 5.8e-53 211.8 361 35.5
Prupe.7G017900 Prunus persica HOM05D007528 ORTHO05D008503 1.7e-52 210.3 189 55.6
Pp3c21_6860 Physcomitrium patens HOM05D007528 ORTHO05D008503 2.9e-52 209.5 197 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4238 Anthoceros agrestis HOM05D007528 ORTHO05D008503 4.9e-52 208.8 176 56.8
CARHR136210 Cardamine hirsuta HOM05D007528 ORTHO05D008503 6.4e-52 208.4 204 56.9
Zm00001eb195960 Zea mays HOM05D007528 ORTHO05D008503 1.4e-51 207.2 194 53.6
SMO266G0100 Selaginella moellendorffii HOM05D007528 ORTHO05D008503 3.2e-51 206.1 173 52.6
Os11g0130200 Oryza sativa ssp. japonica HOM05D007528 ORTHO05D008503 5.4e-51 205.3 179 54.7
CBR_g37627 Chara braunii HOM05D007528 ORTHO05D008503 1.3e-44 184.1 147 54.4
CiPaw.13G169300 Carya illinoinensis HOM05D007528 ORTHO05D008503 1.4e-43 180.6 170 54.7
FAN19G0638 Fragaria x ananassa HOM05D007528 ORTHO05D008503 8.1e-39 164.9 126 62.7
CAN.G1129.33 Capsicum annuum HOM05D007528 ORTHO05D008503 1.9e-35 153.7 119 58.8
Sopen03g008910 Solanum pennellii HOM05D007528 ORTHO05D008503 3.5e-34 149.4 118 58.5
BcaC02g12850 Brassica carinata HOM05D007528 ORTHO05D008503 6.7e-33 145.2 150 54.0
unitig_21.g20663 Utricularia gibba HOM05D007528 ORTHO05D008503 2.1e-31 140.2 216 40.3
Glyma.03G119100 Glycine max HOM05D007528 ORTHO05D008503 4.2e-27 125.9 115 54.8
Hma1.2p1_1327F.1_g275910 Hydrangea macrophylla HOM05D007528 ORTHO05D008503 1.4e-17 94.4 67 64.2
VMungo1383G2363 Vigna mungo HOM05D007528 ORTHO05D008503 2.0e-16 90.5 134 48.5
Glyma.03G119000 Glycine max HOM05D007528 ORTHO05D008503 9.7e-16 88.2 94 53.2
Cfa011867 Carpinus fangiana HOM05D007528 ORTHO05D008503 2.2e-15 87.0 59 64.4
FAN23G1305 Fragaria x ananassa HOM05D007528 ORTHO05D029410 3.1e-14 83.2 80 52.5
SEGI_18622 Sequoiadendron giganteum HOM05D007528 ORTHO05D008503 3.1e-14 83.2 95 47.4
Pp3s30_790 Physcomitrium patens HOM05D002374 ORTHO05D003594 1.7e-07 60.8 91 36.3


User provided reference genes

Program Settings