Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A398T48 Lonicera japonica HOM05D000240 ORTHO05D002608 1.2e-186 656.4 342 100.0
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 3.5e-56 223.0 204 64.2
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 3.0e-52 209.9 204 61.3
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 4.0e-52 209.5 204 60.8
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 1.8e-49 200.7 203 59.6
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 5.4e-49 199.1 197 60.9
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.0e-47 194.9 194 60.3
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 1.5e-46 191.0 202 56.4
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 4.7e-45 186.0 202 55.4
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 1.4e-44 184.5 200 56.0
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 2.3e-44 183.7 204 54.9
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 2.3e-44 183.7 206 53.4
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 8.9e-44 181.8 200 55.5
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 4.4e-43 179.5 205 56.1
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 5.8e-43 179.1 205 56.1
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 1.7e-42 177.6 205 55.6
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 1.7e-42 177.6 203 55.7
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.2e-42 177.2 195 57.4
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 3.7e-42 176.4 208 52.4
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 4.9e-42 176.0 205 56.1
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 1.1e-41 174.9 201 52.7
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.9e-41 174.1 215 52.6
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 3.2e-41 173.3 202 55.0
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 3.2e-41 173.3 205 54.1
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 9.2e-41 171.8 203 56.2
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 1.2e-40 171.4 195 55.4
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 3.0e-39 166.8 207 51.2
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 5.0e-39 166.0 203 51.7
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 5.0e-39 166.0 225 48.9
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 8.6e-39 165.2 199 51.3
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 8.6e-39 165.2 199 51.3
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.1e-38 164.9 202 51.0
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.5e-38 164.5 199 50.8
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 2.5e-38 163.7 199 50.8
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 4.3e-38 162.9 199 51.3
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 7.3e-38 162.2 199 49.2
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 2.1e-37 160.6 202 53.0
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.1e-37 160.6 202 53.0
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 2.8e-37 160.2 201 52.2
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 3.6e-37 159.8 204 50.0
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 3.6e-37 159.8 215 50.7
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 4.7e-37 159.5 246 43.5
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.1e-36 158.3 202 52.5
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 8.9e-36 155.2 199 53.3
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 4.4e-35 152.9 201 48.3
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 2.9e-34 150.2 199 48.7
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 3.7e-34 149.8 198 49.5
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 4.9e-34 149.4 206 45.1
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 1.1e-33 148.3 202 48.0
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 2.4e-33 147.1 201 46.3
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 3.2e-33 146.7 206 45.1
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 3.2e-33 146.7 238 42.4
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 4.1e-33 146.4 198 48.5
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.0e-33 145.6 196 51.5
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 7.8e-32 142.1 204 43.1
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 2.3e-31 140.6 205 45.9
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 3.0e-31 140.2 216 42.6
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 1.9e-30 137.5 173 52.0
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 7.3e-30 135.6 203 48.8
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 3.6e-29 133.3 205 46.3
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 8.1e-29 132.1 208 42.8
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 8.1e-29 132.1 211 39.3
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.1e-28 131.7 205 43.4
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 2.3e-28 130.6 190 44.2
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 8.9e-28 128.6 202 45.0
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 1.5e-27 127.9 184 47.3
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 1.5e-27 127.9 196 45.4
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 2.0e-27 127.5 211 37.9
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 7.5e-27 125.6 211 38.4
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 1.3e-26 124.8 209 44.5
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 1.7e-26 124.4 209 43.5
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 2.2e-26 124.0 205 42.4
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.9e-26 123.6 209 44.5
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 3.7e-26 123.2 223 39.9
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 3.7e-26 123.2 209 43.5
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 5.4e-25 119.4 200 44.5
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 1.6e-24 117.9 194 43.8
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 6.0e-24 115.9 212 39.2
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 7.8e-24 115.5 192 44.3
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 1.3e-23 114.8 166 46.4
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 3.9e-23 113.2 186 43.0
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 3.9e-23 113.2 207 40.6
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 2.8e-21 107.1 178 41.6
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.8e-20 104.4 179 41.3
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 9.9e-19 98.6 121 53.7
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 3.2e-17 93.6 202 36.1
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 1.0e-15 88.6 78 62.8
BraA10t45353Z Brassica rapa HOM05D000240 ORTHO05D002608 2.3e-15 87.4 192 36.5
Cpa.g.sc5.185 Carica papaya HOM05D000240 ORTHO05D002608 1.2e-13 81.6 99 49.5
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 8.1e-13 79.0 208 33.2
MD12G1093100 Malus domestica HOM05D000240 ORTHO05D002608 1.8e-12 77.8 93 47.3
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 3.4e-11 73.6 119 42.0
Ciclev10006521m.g Citrus clementina HOM05D000240 ORTHO05D002608 4.4e-11 73.2 72 55.6
Zm00001eb313020 Zea mays HOM05D000240 ORTHO05D002608 1.3e-10 71.6 193 33.7
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 5.4e-09 66.2 202 31.2
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 1.6e-08 64.7 52 67.3
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 2.1e-08 64.3 149 38.9
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 6.0e-08 62.8 48 72.9
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 6.0e-08 62.8 193 28.5
AL4G43360 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 8.7e-07 58.9 120 41.7
SGA_v2.0_scaffold57G20198 Striga asiatica HOM05D000240 ORTHO05D002608 4.3e-06 56.6 142 38.7


User provided reference genes

Program Settings