Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.7e-176 622.5 304 100.0
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 5.0e-107 391.7 305 65.6
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.3e-99 367.1 291 62.9
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-98 363.6 300 59.7
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.6e-98 361.7 291 61.5
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.4e-95 352.4 302 59.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 8.3e-94 347.8 304 60.5
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 6.0e-92 341.7 294 59.5
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 6.0e-92 341.7 293 56.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 3.3e-90 335.9 345 52.8
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.2e-88 328.6 273 59.0
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.2e-86 323.2 287 57.1
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.9e-86 322.8 272 58.8
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-85 320.5 273 59.3
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.4e-85 320.5 273 59.3
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.4e-85 319.7 302 54.6
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 3.2e-85 319.3 302 55.0
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.4e-85 318.5 289 55.4
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 5.4e-85 318.5 286 57.0
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.6e-84 317.0 288 54.5
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.1e-84 316.6 305 54.1
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.7e-84 316.2 302 54.3
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 4.6e-84 315.5 301 54.5
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.3e-83 313.9 272 55.9
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-83 313.5 294 55.8
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.1e-82 310.8 274 57.7
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.5e-82 310.5 287 56.1
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-82 309.3 293 53.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 4.3e-82 308.9 271 56.1
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 5.6e-82 308.5 296 53.4
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.2e-81 307.4 280 56.4
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.2e-81 307.4 299 54.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.1e-81 306.6 279 56.6
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 3.6e-81 305.8 287 55.4
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.7e-81 305.4 273 55.3
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 6.2e-81 305.1 293 53.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.1e-81 304.7 293 52.9
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.4e-80 303.9 298 53.4
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.8e-80 303.5 273 54.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.8e-80 303.5 274 57.7
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.8e-80 303.5 293 53.6
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.8e-80 303.5 294 53.7
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 2.3e-80 303.1 272 55.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.1e-80 302.8 282 54.3
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.1e-80 302.8 274 57.3
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.2e-80 302.0 274 57.3
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 6.8e-80 301.6 309 50.5
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 8.9e-80 301.2 280 53.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 8.9e-80 301.2 280 53.6
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.5e-79 300.4 276 55.1
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 2.0e-79 300.1 293 53.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 3.4e-79 299.3 288 55.2
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.4e-79 299.3 260 56.5
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.3e-78 297.4 268 56.0
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-78 297.4 265 55.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.7e-78 297.0 272 54.0
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.9e-78 296.2 282 53.2
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 4.9e-78 295.4 272 54.8
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 8.3e-78 294.7 267 55.1
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.1e-77 294.3 275 53.5
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.9e-77 293.5 251 59.4
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.9e-77 293.5 274 56.6
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.2e-77 292.7 276 53.6
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 3.2e-77 292.7 274 56.2
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 7.1e-77 291.6 270 57.0
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.1e-76 290.0 272 55.1
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.7e-76 289.7 297 52.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.7e-76 289.7 271 53.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.5e-76 289.3 269 54.3
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 3.5e-76 289.3 295 50.5
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 4.6e-76 288.9 269 55.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 7.8e-76 288.1 276 52.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 7.8e-76 288.1 290 53.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 7.8e-76 288.1 271 53.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.0e-75 287.7 271 54.2
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.0e-75 287.7 271 54.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-75 287.0 305 50.8
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-75 286.6 305 51.1
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.3e-75 286.6 305 51.1
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.3e-75 286.6 273 53.1
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 3.9e-75 285.8 269 53.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.6e-75 285.0 288 51.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 8.6e-75 284.6 281 52.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 8.6e-75 284.6 271 52.0
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.9e-74 283.5 273 54.6
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.5e-74 283.1 311 47.3
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.3e-74 282.7 268 52.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.3e-74 282.7 269 51.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.3e-74 282.7 294 51.0
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.3e-74 282.3 287 50.9
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.3e-74 282.3 294 51.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.3e-74 281.6 283 49.8
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.7e-73 278.9 317 48.3
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 8.1e-73 278.1 305 48.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 6.8e-72 275.0 268 52.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.5e-71 273.9 278 52.9
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.6e-71 273.1 274 52.6
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.6e-71 273.1 276 54.3
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 4.4e-71 272.3 267 52.4
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.8e-71 271.9 268 55.2
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.3e-70 270.8 288 48.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.7e-70 270.4 284 49.6
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.2e-70 270.0 267 52.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 8.4e-70 268.1 269 53.5
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.2e-69 266.2 236 57.2
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.2e-69 266.2 278 49.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.2e-68 264.2 268 51.5
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.1e-68 263.5 235 54.5
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.1e-68 263.5 276 48.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 4.6e-68 262.3 281 49.8
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 4.6e-68 262.3 272 50.4
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.0e-68 261.9 298 48.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.0e-67 261.2 281 48.8
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.0e-67 259.6 302 48.7
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 6.6e-67 258.5 284 49.3
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.5e-66 257.3 284 49.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 2.8e-65 253.1 284 47.9
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 2.8e-65 253.1 273 48.7
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.8e-65 253.1 286 48.3
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 2.8e-65 253.1 273 50.2
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 6.2e-65 251.9 219 58.4
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.8e-64 250.4 284 46.8
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.8e-64 250.4 260 50.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.4e-64 250.0 270 48.5
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.4e-64 250.0 273 48.4
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.4e-64 250.0 273 48.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 5.3e-64 248.8 270 48.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.5e-63 247.3 273 48.0
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.6e-63 246.5 268 48.5
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 9.9e-63 244.6 285 47.4
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.3e-62 244.2 270 47.4
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.4e-61 240.7 284 46.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-60 237.3 262 50.8
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 4.6e-60 235.7 285 47.0
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 6.0e-60 235.3 291 44.7
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 7.9e-60 235.0 264 46.2
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.3e-59 233.4 256 48.8
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.1e-57 226.9 243 49.8
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-55 220.3 244 48.0
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.4e-55 219.5 239 48.1
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.5e-55 219.2 290 42.4
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 6.0e-52 208.8 312 37.8
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.9e-52 208.4 184 58.7
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.8e-48 197.2 254 40.9
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.5e-47 194.1 302 39.1
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.0e-47 193.7 157 57.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.2e-45 186.4 271 41.0
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.1e-44 183.7 214 46.3
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.7e-43 178.7 306 37.9
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.1e-40 171.4 123 63.4
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.2e-39 167.9 201 43.3
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.6e-36 156.0 134 51.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.9e-34 150.6 254 36.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 3.7e-33 146.4 190 44.2
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 5.3e-32 142.5 227 39.6
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 7.7e-31 138.7 452 26.1
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.4e-27 127.9 142 48.6
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.9e-27 126.3 160 45.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.5e-26 124.4 166 42.8
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.0e-22 109.4 66 69.7
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.4e-21 107.8 82 56.1
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.2e-20 104.8 285 26.3
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.7e-20 103.6 104 51.9
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.7e-20 102.8 106 49.1
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 8.8e-19 98.6 114 46.5
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.3e-18 96.7 111 45.0
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.7e-17 94.4 118 40.7
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 4.5e-15 86.3 89 47.2
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.8e-14 83.2 70 51.4
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 8.5e-14 82.0 85 45.9
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 3.6e-12 76.6 113 36.3
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.6e-12 76.6 105 39.0
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 6.7e-11 72.4 167 31.1
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 7.5e-10 68.9 77 41.6
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 4.8e-09 66.2 68 44.1
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.5e-07 60.1 43 58.1
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.0e-06 58.5 303 22.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 1.0e-06 58.5 55 49.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 3.8e-06 56.6 56 46.4
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.0e-06 56.2 64 51.6


User provided reference genes

Program Settings