Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 2.1e-174 615.5 293 100.0
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 1.2e-166 589.7 284 98.2
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 3.8e-128 461.8 283 76.0
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 5.0e-128 461.5 284 75.7
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.1e-127 460.3 280 77.1
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.9e-127 459.5 280 77.5
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 2.1e-126 456.1 283 76.0
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 2.1e-126 456.1 283 75.6
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 3.6e-126 455.3 282 75.9
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 4.7e-126 454.9 282 75.2
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 6.1e-126 454.5 282 75.9
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 1.0e-125 453.8 280 75.4
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.8e-125 453.0 284 74.3
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 1.8e-125 453.0 284 73.9
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 3.9e-125 451.8 279 74.9
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 5.1e-125 451.4 283 74.9
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.1e-124 450.3 282 74.8
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 7.4e-124 447.6 282 73.4
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 9.7e-124 447.2 284 73.6
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.3e-123 446.8 282 74.1
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.7e-123 446.4 282 74.5
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 2.2e-123 446.0 282 74.1
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 3.7e-123 445.3 280 74.6
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.7e-123 445.3 282 72.7
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.7e-123 445.3 282 72.7
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 4.8e-123 444.9 282 73.8
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 6.3e-123 444.5 281 73.7
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 8.2e-123 444.1 280 74.6
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.1e-122 443.7 282 73.4
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 1.4e-122 443.4 280 74.3
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.4e-122 443.4 282 74.1
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 1.8e-122 443.0 280 74.3
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 1.8e-122 443.0 280 74.3
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 2.4e-122 442.6 282 72.7
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.4e-122 442.6 282 73.4
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 2.4e-122 442.6 282 73.0
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.4e-122 442.6 280 74.3
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 3.1e-122 442.2 280 73.9
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 4.1e-122 441.8 280 73.6
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 7.0e-122 441.0 280 74.3
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 9.1e-122 440.7 280 73.6
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 9.1e-122 440.7 290 70.3
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 9.1e-122 440.7 280 72.9
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 9.1e-122 440.7 280 72.9
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 1.2e-121 440.3 280 73.2
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.2e-121 440.3 282 73.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 1.2e-121 440.3 280 73.9
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.5e-121 439.9 280 73.2
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.5e-121 439.9 280 72.5
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 2.0e-121 439.5 280 73.2
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 2.0e-121 439.5 280 73.2
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.0e-121 439.5 280 74.3
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 3.5e-121 438.7 282 72.0
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 5.9e-121 438.0 283 71.4
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 5.9e-121 438.0 285 73.7
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 1.0e-120 437.2 280 72.5
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.0e-120 437.2 280 73.9
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 1.0e-120 437.2 282 71.6
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 1.3e-120 436.8 282 72.0
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.7e-120 436.4 280 73.6
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.9e-120 435.6 280 72.1
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 3.8e-120 435.3 280 72.5
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 5.0e-120 434.9 280 74.3
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 6.5e-120 434.5 290 69.7
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 6.5e-120 434.5 290 69.0
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.4e-119 433.3 275 74.2
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 1.4e-119 433.3 280 72.9
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 1.9e-119 433.0 296 69.9
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 2.5e-119 432.6 283 73.1
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.5e-119 432.6 280 72.1
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 3.2e-119 432.2 280 72.1
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 3.2e-119 432.2 283 71.7
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 4.2e-119 431.8 280 71.8
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 4.2e-119 431.8 281 70.1
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 5.5e-119 431.4 282 70.9
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 5.5e-119 431.4 282 70.9
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 7.2e-119 431.0 282 71.6
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 2.1e-118 429.5 280 71.4
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 2.7e-118 429.1 280 71.8
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 4.7e-118 428.3 280 73.2
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 4.7e-118 428.3 280 71.1
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 6.1e-118 427.9 280 71.4
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 8.0e-118 427.6 280 72.5
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 8.0e-118 427.6 280 72.5
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 8.0e-118 427.6 282 69.1
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 8.0e-118 427.6 283 71.0
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 1.0e-117 427.2 280 72.5
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 1.0e-117 427.2 277 70.8
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 3.0e-117 425.6 280 72.1
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 3.0e-117 425.6 280 70.4
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 6.7e-117 424.5 280 71.8
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 6.7e-117 424.5 283 68.9
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 1.1e-116 423.7 280 71.4
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 2.0e-116 422.9 280 71.1
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 2.0e-116 422.9 347 61.4
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 4.4e-116 421.8 280 71.1
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 9.7e-116 420.6 280 71.8
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 9.7e-116 420.6 280 70.0
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.3e-115 420.2 283 68.9
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.7e-115 419.9 283 67.8
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 3.7e-115 418.7 281 72.2
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 6.3e-115 417.9 281 72.2
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 8.2e-115 417.5 281 71.9
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 5.3e-114 414.8 281 70.5
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 9.1e-114 414.1 281 71.2
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 9.1e-114 414.1 281 71.2
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 9.1e-114 414.1 281 71.2
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 7.7e-113 411.0 282 71.3
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 3.2e-111 405.6 264 72.7
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 2.1e-110 402.9 280 68.6
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 3.6e-110 402.1 262 71.0
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.7e-107 393.3 286 68.9
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 5.3e-106 388.3 280 63.6
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.0e-104 384.0 279 63.8
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.2e-102 377.1 271 66.8
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 1.0e-101 374.0 277 59.9
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.0e-101 374.0 282 61.7
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.8e-101 373.2 250 69.2
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 2.3e-101 372.9 278 61.5
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 6.8e-101 371.3 250 68.4
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 4.8e-99 365.2 279 58.4
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 3.5e-97 359.0 281 63.0
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.5e-97 358.6 279 58.1
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 9.5e-95 350.9 280 59.3
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 2.8e-94 349.4 267 65.2
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.8e-91 339.3 247 67.6
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 6.6e-88 328.2 231 66.7
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.7e-86 322.0 275 54.2
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 4.4e-76 288.9 161 81.4
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.7e-75 287.0 159 81.1
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 2.8e-70 269.6 279 49.8
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-61 240.7 170 65.9
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 4.6e-57 225.7 168 65.5
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 2.9e-51 206.5 119 80.7
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 6.4e-51 205.3 147 66.0
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 2.3e-48 196.8 247 42.5
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.9e-47 193.7 224 47.8
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-45 188.0 188 46.3
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 6.4e-43 178.7 138 66.7
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 6.7e-40 168.7 87 83.9
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 3.1e-37 159.8 87 75.9
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 3.8e-35 152.9 257 39.3
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 6.5e-35 152.1 219 37.9
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 1.3e-27 127.9 86 67.4
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 5.5e-26 122.5 60 81.7
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 9.3e-26 121.7 75 70.7
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 2.7e-25 120.2 75 70.7
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.7e-19 100.9 52 82.7
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 1.1e-18 98.2 50 90.0
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 8.8e-16 88.6 47 72.3
Cfa025962 Carpinus fangiana HOM05D004928 ORTHO05D005901 2.6e-12 77.0 310 23.9
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 1.7e-06 57.8 132 29.5
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 2.8e-06 57.0 146 29.5
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 3.7e-06 56.6 146 29.5
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 4.8e-06 56.2 121 31.4
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 4.8e-06 56.2 132 30.3
Glyma.01G046200 Glycine max HOM05D002775 ORTHO05D003262 8.2e-06 55.5 140 29.3


User provided reference genes

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