Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A339T46 Lonicera japonica HOM05D000054 ORTHO05D010039 8.2e-76 287.0 143 100.0
MD15G1240200 Malus domestica HOM05D000054 ORTHO05D000286 1.4e-14 83.6 100 44.0
MD05G1260400 Malus domestica HOM05D000054 ORTHO05D000286 8.9e-14 80.9 96 44.8
MD05G1261000 Malus domestica HOM05D000054 ORTHO05D010039 3.4e-13 79.0 99 41.4
Lsat_1_v5_gn_6_48141 Lactuca sativa HOM05D000054 ORTHO05D000286 5.8e-13 78.2 89 47.2
MD00G1046700 Malus domestica HOM05D000054 ORTHO05D000286 2.2e-12 76.3 88 45.5
MD05G1261100 Malus domestica HOM05D000054 ORTHO05D000286 2.2e-12 76.3 99 42.4
GSVIVG01037993001 Vitis vinifera HOM05D000054 ORTHO05D000286 2.9e-12 75.9 96 45.8
Prupe.4G104500 Prunus persica HOM05D000054 ORTHO05D000286 4.9e-12 75.1 91 42.9
Prupe.4G104900 Prunus persica HOM05D000054 ORTHO05D000286 4.9e-12 75.1 96 39.6
CiPaw.11G063900 Carya illinoinensis HOM05D000054 ORTHO05D010039 8.3e-12 74.3 103 40.8
HanXRQChr02g0056051 Helianthus annuus HOM05D000054 ORTHO05D000286 8.3e-12 74.3 89 46.1
Prupe.4G105100 Prunus persica HOM05D000054 ORTHO05D000286 1.1e-11 73.9 93 44.1
MD05G1260700 Malus domestica HOM05D000054 ORTHO05D000286 1.4e-11 73.6 99 40.4
QL05p063235 Quercus lobata HOM05D000054 ORTHO05D000286 1.4e-11 73.6 87 48.3
Prupe.4G104300 Prunus persica HOM05D000054 ORTHO05D000286 4.1e-11 72.0 91 39.6
RcHm_v2.0_Chr5g0018901 Rosa chinensis HOM05D000054 ORTHO05D000286 5.4e-11 71.6 96 43.8
HanXRQChr02g0056041 Helianthus annuus HOM05D000054 ORTHO05D000286 7.1e-11 71.2 87 44.8
Potri.003G148000 Populus trichocarpa HOM05D000054 ORTHO05D000286 1.2e-10 70.5 93 44.1
TAR627G0871 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.6e-10 70.1 86 44.2
QL05p063431 Quercus lobata HOM05D000054 ORTHO05D000286 2.1e-10 69.7 96 40.6
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.7e-10 69.3 93 43.0
HanXRQChr02g0056031 Helianthus annuus HOM05D000054 ORTHO05D000286 6.0e-10 68.2 89 41.6
Potri.001G082900 Populus trichocarpa HOM05D000054 ORTHO05D000286 6.0e-10 68.2 96 40.6
RcHm_v2.0_Chr5g0018911 Rosa chinensis HOM05D000054 ORTHO05D010039 6.0e-10 68.2 96 41.7
GSVIVG01037982001 Vitis vinifera HOM05D000054 ORTHO05D000286 6.0e-10 68.2 96 40.6
Gohir.A10G048200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 7.8e-10 67.8 113 37.2
QL05p063388 Quercus lobata HOM05D000054 ORTHO05D000286 1.0e-09 67.4 96 41.7
Ciclev10014117m.g Citrus clementina HOM05D000054 ORTHO05D000286 1.7e-09 66.6 96 40.6
Ciclev10018029m.g Citrus clementina HOM05D000054 ORTHO05D000286 3.0e-09 65.9 88 43.2
Ciclev10018038m.g Citrus clementina HOM05D000054 ORTHO05D000286 3.0e-09 65.9 88 43.2
CiPaw.09G150200 Carya illinoinensis HOM05D000054 ORTHO05D000286 3.9e-09 65.5 96 39.6
Haze_07829 Corylus avellana HOM05D000054 ORTHO05D010039 3.9e-09 65.5 91 44.0
COL.COLO4_30909 Corchorus olitorius HOM05D000773 ORTHO05D000286 5.1e-09 65.1 98 38.8
Gohir.D07G122066 Gossypium hirsutum HOM05D000054 ORTHO05D010039 6.6e-09 64.7 98 38.8
Gorai.001G131800 Gossypium raimondii HOM05D000054 ORTHO05D010039 6.6e-09 64.7 98 38.8
Gorai.011G052300 Gossypium raimondii HOM05D000054 ORTHO05D000286 6.6e-09 64.7 113 35.4
Thecc.06G134700 Theobroma cacao HOM05D000054 ORTHO05D000286 6.6e-09 64.7 102 39.2
CANSAT35G1596 Cannabis sativa HOM05D000054 ORTHO05D000286 8.6e-09 64.3 100 37.0
ECA233G2866 Erigeron canadensis HOM05D000054 ORTHO05D000171 8.6e-09 64.3 100 39.0
Gohir.D10G048900 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.6e-09 64.3 113 34.5
Nn7g37009 Nelumbo nucifera HOM05D000054 ORTHO05D010039 8.6e-09 64.3 94 39.4
Ciclev10017491m.g Citrus clementina HOM05D000054 ORTHO05D010039 1.1e-08 63.9 88 42.0
Prupe.4G175200 Prunus persica HOM05D000054 ORTHO05D000171 1.1e-08 63.9 69 46.4
RcHm_v2.0_Chr5g0018861 Rosa chinensis HOM05D000054 ORTHO05D010039 1.1e-08 63.9 97 40.2
MBI18_g13607_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 1.5e-08 63.5 94 39.4
Cfa022967 Carpinus fangiana HOM05D000054 ORTHO05D010039 1.9e-08 63.2 94 39.4
Manes.03G076600 Manihot esculenta HOM05D000054 ORTHO05D000286 1.9e-08 63.2 93 43.0
Aqoxy1G01465 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 2.5e-08 62.8 104 39.4
QL04p079123 Quercus lobata HOM05D000054 ORTHO05D000171 2.5e-08 62.8 92 39.1
QL05p063291 Quercus lobata HOM05D000054 ORTHO05D000286 2.5e-08 62.8 94 42.6
RcHm_v2.0_Chr5g0018731 Rosa chinensis HOM05D000054 ORTHO05D000286 2.5e-08 62.8 85 43.5
RcHm_v2.0_Chr5g0018891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.5e-08 62.8 95 40.0
Thecc.07G163600 Theobroma cacao HOM05D000054 ORTHO05D000171 2.5e-08 62.8 90 40.0
TAR626G1233 Trochodendron aralioides HOM05D000054 ORTHO05D000286 3.3e-08 62.4 93 37.6
RcHm_v2.0_Chr5g0018761 Rosa chinensis HOM05D000054 ORTHO05D000286 4.3e-08 62.0 122 34.4
MBI18_g28121_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010039 5.6e-08 61.6 86 39.5
vmacro11710 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 5.6e-08 61.6 87 41.4
CiPaw.09G150100 Carya illinoinensis HOM05D000054 ORTHO05D000286 7.3e-08 61.2 96 36.5
Gohir.A10G048100 Gossypium hirsutum HOM05D000054 ORTHO05D000286 7.3e-08 61.2 89 38.2
Gorai.011G052100 Gossypium raimondii HOM05D000054 ORTHO05D000286 9.5e-08 60.8 89 38.2
Gorai.N011200 Gossypium raimondii HOM05D000054 ORTHO05D000286 9.5e-08 60.8 88 38.6
Thecc.06G134500 Theobroma cacao HOM05D000054 ORTHO05D000286 9.5e-08 60.8 98 36.7
MD00G1024400 Malus domestica HOM05D000054 ORTHO05D010039 1.2e-07 60.5 75 45.3
Thecc.06G134900 Theobroma cacao HOM05D000054 ORTHO05D000286 1.2e-07 60.5 89 38.2
COL.COLO4_30915 Corchorus olitorius HOM05D000054 ORTHO05D000286 1.6e-07 60.1 105 35.2
Duzib160G0570 Durio zibethinus HOM05D000054 ORTHO05D000286 1.6e-07 60.1 102 36.3
Duzib160G0729 Durio zibethinus HOM05D000054 ORTHO05D000286 2.1e-07 59.7 98 36.7
Manes.16G057300 Manihot esculenta HOM05D000054 ORTHO05D000286 2.8e-07 59.3 96 37.5
PSO541G3146 Papaver somniferum HOM05D000054 ORTHO05D000286 2.8e-07 59.3 83 43.4
PGR031G3107 Punica granatum HOM05D000054 ORTHO05D000286 2.8e-07 59.3 94 34.0
QL04p079377 Quercus lobata HOM05D000054 ORTHO05D000286 2.8e-07 59.3 88 38.6
VMungo1127G0115 Vigna mungo HOM05D000054 ORTHO05D000286 2.8e-07 59.3 90 40.0
Nn7g37006 Nelumbo nucifera HOM05D000054 ORTHO05D000286 4.7e-07 58.5 83 44.6
TAR627G0538 Trochodendron aralioides HOM05D000054 ORTHO05D000171 4.7e-07 58.5 94 40.4
vmacro11712 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 4.7e-07 58.5 86 38.4
CSS0028649 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 6.2e-07 58.2 81 40.7
Cfa022966 Carpinus fangiana HOM05D000054 ORTHO05D000286 6.2e-07 58.2 89 39.3
FAN16G3517 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.2e-07 58.2 92 34.8
MBI18_g31328_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010247 6.2e-07 58.2 79 39.2
CANSAT80G0992 Cannabis sativa HOM05D000054 ORTHO05D000286 8.1e-07 57.8 104 35.6
FvH4_3g15410 Fragaria vesca HOM05D000054 ORTHO05D000171 8.1e-07 57.8 92 34.8
FvH4_3g15440 Fragaria vesca HOM05D000054 ORTHO05D000286 8.1e-07 57.8 92 34.8
FAN11G0840 Fragaria x ananassa HOM05D000054 ORTHO05D000286 8.1e-07 57.8 81 38.3
FAN25G2179 Fragaria x ananassa HOM05D000054 ORTHO05D000171 8.1e-07 57.8 92 34.8
Gohir.A09G076200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.1e-07 57.8 98 36.7
Gohir.A10G048300 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.1e-07 57.8 91 35.2
Gohir.D10G049000 Gossypium hirsutum HOM05D000054 ORTHO05D000286 8.1e-07 57.8 89 37.1
MBI18_g01870_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 8.1e-07 57.8 92 40.2
QL04p077429 Quercus lobata HOM05D000054 ORTHO05D000171 8.1e-07 57.8 45 55.6
Rhsim06G0240700 Rhododendron simsii HOM05D000054 ORTHO05D000286 8.1e-07 57.8 81 42.0
CSS0049836 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.1e-06 57.4 81 39.5
CANSAT80G2791 Cannabis sativa HOM05D000054 ORTHO05D000286 1.1e-06 57.4 113 37.2
Ciclev10018201m.g Citrus clementina HOM05D000054 ORTHO05D010039 1.1e-06 57.4 98 36.7
FvH4_3g15430 Fragaria vesca HOM05D000054 ORTHO05D000286 1.1e-06 57.4 81 38.3
Gorai.011G052600 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.1e-06 57.4 99 34.3
PSO675G6484 Papaver somniferum HOM05D000054 ORTHO05D000286 1.1e-06 57.4 85 41.2
Duzib235G0871 Durio zibethinus HOM05D000054 ORTHO05D000286 1.4e-06 57.0 89 38.2
QL04p079309 Quercus lobata HOM05D000054 ORTHO05D000286 1.8e-06 56.6 82 39.0
MELO3C012618.2 Cucumis melo HOM05D000054 ORTHO05D000171 2.4e-06 56.2 39 56.4
Duzib235G0078 Durio zibethinus HOM05D000054 ORTHO05D000286 2.4e-06 56.2 93 35.5
Gohir.A10G048400 Gossypium hirsutum HOM05D000054 ORTHO05D000286 2.4e-06 56.2 99 33.3
Nn7g38499 Nelumbo nucifera HOM05D000054 ORTHO05D010039 2.4e-06 56.2 97 38.1
QL04p077484 Quercus lobata HOM05D000054 ORTHO05D000286 2.4e-06 56.2 84 38.1
RcHm_v2.0_Chr5g0025891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.4e-06 56.2 82 36.6
Gohir.D10G049200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.1e-06 55.8 89 36.0
QL04p064575 Quercus lobata HOM05D000054 ORTHO05D010039 3.1e-06 55.8 88 38.6
vmacro11709 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 3.1e-06 55.8 81 40.7
GSVIVG01013622001 Vitis vinifera HOM05D000054 ORTHO05D010039 3.1e-06 55.8 56 44.6
FAN21G2765 Fragaria x ananassa HOM05D000054 ORTHO05D000286 4.0e-06 55.5 92 33.7
Gorai.011G052400 Gossypium raimondii HOM05D000054 ORTHO05D000286 4.0e-06 55.5 91 35.2
Rhsim06G0240800 Rhododendron simsii HOM05D000054 ORTHO05D000286 4.0e-06 55.5 82 41.5
Sed0000303 Sechium edule HOM05D000054 ORTHO05D000286 4.0e-06 55.5 85 38.8
CANSAT80G2409 Cannabis sativa HOM05D000054 ORTHO05D000171 5.2e-06 55.1 93 37.6
QL04p037780 Quercus lobata HOM05D000054 ORTHO05D010039 5.2e-06 55.1 85 38.8
Rhsim06G0143000 Rhododendron simsii HOM05D000054 ORTHO05D000286 5.2e-06 55.1 81 39.5
GSVIVG01029718001 Vitis vinifera HOM05D000054 ORTHO05D000171 5.2e-06 55.1 94 36.2
CANSAT35G0274 Cannabis sativa HOM05D000054 ORTHO05D000286 6.8e-06 54.7 98 31.6
COL.COLO4_38354 Corchorus olitorius HOM05D000054 ORTHO05D000286 6.8e-06 54.7 90 37.8
Duzib213G0489 Durio zibethinus HOM05D000054 ORTHO05D010039 6.8e-06 54.7 64 46.9
MBI18_g22099_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010039 6.8e-06 54.7 34 64.7
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 6.8e-06 54.7 83 38.6
vmacro11708 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 6.8e-06 54.7 80 42.5
CANSAT80G2639 Cannabis sativa HOM05D000054 ORTHO05D000286 8.9e-06 54.3 107 36.4
ClCG09G022630 Citrullus lanatus HOM05D000054 ORTHO05D000286 8.9e-06 54.3 39 56.4
COL.COLO4_02827 Corchorus olitorius HOM05D000054 ORTHO05D010039 8.9e-06 54.3 90 35.6
Duzib187G0821 Durio zibethinus HOM05D000054 ORTHO05D000171 8.9e-06 54.3 84 39.3
Gorai.011G052000 Gossypium raimondii HOM05D000054 ORTHO05D000286 8.9e-06 54.3 88 34.1
Potri.007G067900 Populus trichocarpa HOM05D000054 ORTHO05D000286 8.9e-06 54.3 95 34.7
Thecc.06G134600 Theobroma cacao HOM05D000054 ORTHO05D000286 8.9e-06 54.3 51 49.0


User provided reference genes

Program Settings