Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A328G59 Lonicera japonica HOM05D003675 ORTHO05D004318 0.0e+00 1160.6 577 100.0
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 9.6e-293 1009.6 689 75.2
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.6e-292 1008.8 612 82.7
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 6.9e-291 1003.4 689 75.0
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 1.5e-290 1002.3 689 74.9
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 3.4e-290 1001.1 689 75.0
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 2.9e-289 998.0 689 74.7
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 5.5e-288 993.8 689 74.5
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 9.3e-288 993.0 694 73.9
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 9.3e-288 993.0 689 74.0
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 1.6e-287 992.3 689 74.7
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 2.7e-287 991.5 689 74.2
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 4.6e-287 990.7 689 74.3
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 1.3e-286 989.2 689 74.0
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 1.3e-286 989.2 688 73.4
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 5.1e-286 987.3 708 73.0
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 6.7e-286 986.9 689 73.7
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 1.1e-285 986.1 689 73.9
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 4.3e-285 984.2 689 73.6
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 1.3e-284 982.6 689 73.9
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 1.6e-284 982.2 689 73.4
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 2.2e-284 981.9 689 73.4
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 2.8e-284 981.5 689 74.5
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 2.8e-284 981.5 689 74.7
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 3.7e-284 981.1 689 73.0
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 4.8e-284 980.7 689 74.2
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 6.3e-284 980.3 689 74.3
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.1e-283 979.5 689 73.7
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 2.4e-283 978.4 691 73.7
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 3.1e-283 978.0 689 72.9
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 6.9e-283 976.9 689 73.3
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 6.9e-283 976.9 689 73.3
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 6.9e-283 976.9 689 73.1
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 1.2e-282 976.1 689 73.7
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 1.2e-282 976.1 690 71.9
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 2.0e-282 975.3 689 72.7
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 2.0e-282 975.3 689 73.4
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 2.6e-282 974.9 689 72.6
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 3.4e-282 974.5 733 70.5
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 7.7e-282 973.4 690 72.0
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.3e-281 972.6 689 73.3
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 2.9e-281 971.5 689 72.7
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 8.5e-281 969.9 693 72.2
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 1.9e-280 968.8 689 73.6
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 1.9e-280 968.8 688 72.8
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 4.2e-280 967.6 691 72.4
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 7.2e-280 966.8 689 72.1
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 7.2e-280 966.8 689 72.1
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 7.2e-280 966.8 689 73.3
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 7.2e-280 966.8 779 66.2
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 2.1e-279 965.3 689 71.7
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 2.7e-279 964.9 689 72.0
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 1.0e-278 963.0 689 73.1
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.4e-278 962.6 689 71.4
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.8e-278 962.2 689 72.0
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.8e-278 962.2 691 72.8
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 2.3e-278 961.8 689 72.9
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 3.0e-278 961.4 691 71.6
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 8.8e-278 959.9 750 68.0
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.1e-277 959.5 689 72.1
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 1.1e-277 959.5 689 71.6
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 1.1e-277 959.5 689 71.6
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.5e-277 959.1 689 72.0
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 2.6e-277 958.4 692 71.2
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 2.6e-277 958.4 689 71.4
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 4.4e-277 957.6 689 71.8
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 9.7e-277 956.4 689 71.3
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 2.2e-276 955.3 689 72.4
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 2.8e-276 954.9 689 70.4
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 6.3e-276 953.7 689 71.4
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.1e-275 953.0 692 72.1
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 1.4e-275 952.6 689 70.8
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 2.4e-275 951.8 689 70.7
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 2.4e-275 951.8 691 70.9
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 6.9e-275 950.3 692 70.1
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 1.2e-274 949.5 689 70.5
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 2.0e-274 948.7 689 70.7
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 4.5e-274 947.6 689 71.4
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 1.3e-273 946.0 689 70.4
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 1.7e-273 945.7 689 70.5
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 2.2e-273 945.3 689 70.4
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 1.1e-272 943.0 689 71.1
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 4.2e-272 941.0 693 70.6
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 2.1e-271 938.7 689 70.0
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 4.7e-271 937.6 689 70.0
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 6.1e-271 937.2 689 70.0
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 6.1e-271 937.2 689 70.0
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 7.9e-271 936.8 689 70.0
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 7.9e-271 936.8 689 70.0
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 7.9e-271 936.8 689 69.7
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 7.9e-271 936.8 703 69.4
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.8e-270 935.6 689 70.0
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 1.8e-270 935.6 689 69.4
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 8.8e-270 933.3 689 69.1
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 1.5e-269 932.6 689 69.4
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 3.3e-269 931.4 689 69.5
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 3.3e-269 931.4 689 69.5
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 9.7e-269 929.9 692 68.9
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.2e-268 928.7 689 70.0
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 2.2e-268 928.7 689 68.8
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 2.8e-268 928.3 689 69.2
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 2.8e-268 928.3 689 69.2
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 2.8e-268 928.3 660 72.6
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 6.3e-268 927.2 689 69.1
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 1.1e-267 926.4 689 68.9
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 2.4e-267 925.2 689 69.7
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 3.1e-267 924.9 689 69.7
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 2.5e-264 915.2 692 67.9
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 7.2e-264 913.7 693 69.6
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 7.2e-264 913.7 681 68.9
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 8.2e-260 900.2 655 71.1
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 2.0e-258 895.6 767 61.9
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.7e-257 892.5 689 68.2
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 4.2e-256 887.9 688 67.3
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.2e-253 879.8 689 67.3
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 3.8e-249 864.8 655 68.5
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 1.9e-248 862.4 690 64.3
arahy.Tifrunner.gnm1.ann1.119T42 Arachis hypogaea HOM05D003675 ORTHO05D004318 4.2e-248 861.3 655 68.5
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 4.7e-247 857.8 689 65.6
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 2.4e-243 845.5 916 52.5
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 4.5e-242 841.3 641 69.3
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 3.8e-241 838.2 636 70.1
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 3.3e-232 808.5 693 62.0
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 2.1e-231 805.8 634 66.6
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.2e-229 800.0 693 60.6
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 3.4e-229 798.5 692 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 1.3e-225 786.6 694 60.5
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 9.5e-224 780.4 598 70.2
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 4.0e-222 775.0 587 69.2
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.3e-217 759.2 694 58.2
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.3e-217 759.2 694 58.2
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.5e-216 755.7 671 62.7
FAN25G0162 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.2e-215 753.4 415 89.9
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.8e-215 752.3 694 58.1
SEGI_15305 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 6.8e-214 747.7 607 65.1
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.4e-213 745.3 696 57.2
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 4.4e-213 745.0 695 61.2
SHI20675 Sapria himalayana HOM05D003675 ORTHO05D000023 2.1e-210 736.1 455 82.2
Gohir.D02G239100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 3.5e-210 735.3 417 86.8
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 7.8e-210 734.2 424 84.0
CDE04G1522 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.9e-203 713.0 426 83.3
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 5.8e-189 664.8 580 62.1
CBR_g27771 Chara braunii HOM05D003675 ORTHO05D004318 2.1e-178 629.8 441 68.3
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.0e-173 613.2 580 61.0
PGSC0003DMG400003173 Solanum tuberosum HOM05D003675 ORTHO05D004318 6.3e-159 565.1 326 87.1
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 9.4e-147 524.6 488 55.9
MBI18_g34277_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 3.6e-138 496.1 326 79.1
Nitab4.5_0005814g0040 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.4e-134 484.2 489 56.9
arahy.Tifrunner.gnm1.ann1.DS3C7B Arachis hypogaea HOM05D003675 ORTHO05D004318 5.0e-124 449.1 250 85.6
BcaB03g13829 Brassica carinata HOM05D003675 ORTHO05D004318 5.0e-124 449.1 273 82.8
TAR626G0983 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.3e-119 434.5 248 87.1
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 1.4e-113 414.5 791 34.3
HPP92_010708 Vanilla planifolia HOM05D003675 ORTHO05D004318 2.6e-112 410.2 257 77.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.1e-110 404.8 376 58.2
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.4e-102 377.1 689 39.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.1e-97 361.7 197 89.8
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 9.6e-91 338.6 338 55.9
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.1e-86 325.1 356 53.1
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 3.5e-85 320.1 324 55.9
RcHm_v2.0_Chr5g0015811 Rosa chinensis HOM05D003675 ORTHO05D004318 2.1e-82 310.8 152 92.8
RcHm_v2.0_Chr5g0015801 Rosa chinensis HOM05D003675 ORTHO05D004318 5.4e-78 296.2 186 83.9
Haze_05889 Corylus avellana HOM05D003675 ORTHO05D004318 2.0e-72 277.7 300 51.7
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 9.4e-54 215.7 561 25.3
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 2.1e-53 214.5 270 47.4
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.1e-51 208.8 574 23.3
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.5e-51 208.4 574 23.7
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.8e-49 201.4 567 24.5
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.4e-49 201.1 567 24.0
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 5.3e-49 199.9 607 24.4
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 9.1e-49 199.1 610 24.1
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-38 163.3 141 64.5
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 2.1e-37 161.4 369 28.5
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 7.4e-35 152.9 132 58.3
Haze_27044 Corylus avellana HOM05D003675 ORTHO05D004318 1.3e-34 152.1 465 25.6
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 1.3e-31 142.1 120 62.5
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 2.0e-24 118.2 71 77.5
Haze_18108 Corylus avellana HOM05D001121 ORTHO05D001256 1.5e-22 112.1 151 47.7
Haze_05681 Corylus avellana HOM05D003675 ORTHO05D004318 4.2e-22 110.5 203 42.4
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 4.0e-20 104.0 71 69.0
Sc03g0004140 Simmondsia chinensis HOM05D003675 ORTHO05D004318 3.7e-18 97.4 84 63.1
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 4.1e-17 94.0 164 45.1
AUR62041920 Chenopodium quinoa HOM05D003142 ORTHO05D003600 2.4e-09 68.2 59 66.1


User provided reference genes

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