Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A328G58 Lonicera japonica HOM05D003675 ORTHO05D004318 4.6e-169 597.8 304 100.0
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 4.2e-106 388.7 272 77.2
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 2.6e-103 379.4 270 77.8
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 1.2e-100 370.5 277 74.7
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 1.3e-99 367.1 274 75.2
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 6.6e-99 364.8 273 73.3
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 1.9e-98 363.2 285 72.3
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 7.3e-98 361.3 282 72.3
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.6e-97 360.1 278 72.3
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 1.8e-96 356.7 281 70.8
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 1.7e-94 350.1 270 69.3
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 2.2e-94 349.7 271 72.0
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 4.9e-94 348.6 276 70.7
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 5.4e-93 345.1 269 72.1
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 7.0e-93 344.7 281 67.6
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 1.2e-92 344.0 275 71.3
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 2.7e-92 342.8 281 67.3
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 6.0e-92 341.7 278 68.0
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 7.8e-92 341.3 273 70.0
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 1.7e-91 340.1 270 70.7
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 3.0e-91 339.3 273 70.3
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 1.1e-90 337.4 270 72.6
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 1.5e-90 337.0 272 71.3
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 4.3e-90 335.5 277 67.9
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 4.3e-90 335.5 287 67.2
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 4.3e-90 335.5 271 69.4
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.2e-89 334.0 270 68.9
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 2.8e-89 332.8 287 66.6
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 3.6e-89 332.4 295 65.1
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 6.2e-89 331.6 273 67.8
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 6.2e-89 331.6 271 69.4
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 6.2e-89 331.6 276 66.7
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 6.2e-89 331.6 270 69.6
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 1.4e-88 330.5 272 66.9
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 1.4e-88 330.5 284 66.5
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 1.8e-88 330.1 271 70.8
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 1.8e-88 330.1 276 64.5
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 2.3e-88 329.7 270 70.7
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 3.1e-88 329.3 271 70.8
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 3.1e-88 329.3 283 66.4
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 4.0e-88 328.9 272 66.9
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 1.2e-87 327.4 268 67.5
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 1.5e-87 327.0 276 66.7
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 4.4e-87 325.5 268 69.0
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 7.5e-87 324.7 273 68.5
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.3e-86 323.9 242 73.1
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.7e-86 323.6 257 70.0
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.7e-86 323.6 276 65.6
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 1.7e-86 323.6 275 65.1
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 2.9e-86 322.8 265 67.2
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 8.3e-86 321.2 270 69.3
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 1.1e-85 320.9 279 65.2
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 2.4e-85 319.7 276 65.2
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.4e-85 319.7 268 68.3
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 5.4e-85 318.5 273 66.3
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 5.4e-85 318.5 286 63.3
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 5.4e-85 318.5 269 65.8
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 5.4e-85 318.5 273 66.7
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.2e-84 317.4 268 67.5
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 1.2e-84 317.4 275 66.2
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 1.2e-84 317.4 274 67.2
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 2.1e-84 316.6 273 67.0
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 2.1e-84 316.6 271 67.9
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 2.7e-84 316.2 250 70.4
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 2.7e-84 316.2 271 67.2
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 3.5e-84 315.8 273 67.0
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 4.6e-84 315.5 280 66.1
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.0e-83 314.3 250 70.0
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.3e-83 313.9 276 63.4
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.3e-83 313.9 276 63.4
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 1.3e-83 313.9 257 66.5
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.7e-83 313.5 276 63.4
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 2.3e-83 313.2 272 65.4
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 3.0e-83 312.8 268 65.7
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.0e-83 312.8 268 65.7
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 3.9e-83 312.4 271 66.8
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 6.6e-83 311.6 257 66.1
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 8.6e-83 311.2 271 66.8
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 8.6e-83 311.2 271 66.8
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.1e-82 310.8 271 66.8
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 1.1e-82 310.8 271 66.1
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 1.1e-82 310.8 271 66.4
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 4.3e-82 308.9 271 66.4
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 4.3e-82 308.9 271 66.4
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 5.6e-82 308.5 260 66.9
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 7.3e-82 308.1 275 64.4
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 7.3e-82 308.1 281 61.6
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 7.3e-82 308.1 268 65.7
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 9.5e-82 307.8 271 66.1
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 9.5e-82 307.8 251 67.3
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 9.5e-82 307.8 276 64.1
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 1.2e-81 307.4 273 63.7
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 1.6e-81 307.0 271 66.1
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 2.1e-81 306.6 274 63.9
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 8.1e-81 304.7 270 65.9
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 8.1e-81 304.7 222 74.8
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 1.1e-80 304.3 279 63.8
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.1e-80 304.3 268 63.1
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.8e-80 303.5 278 63.7
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 6.8e-80 301.6 419 46.5
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 6.8e-80 301.6 268 63.4
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 2.0e-79 300.1 355 53.5
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 4.4e-79 298.9 272 64.0
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 4.4e-79 298.9 327 55.0
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 1.7e-78 297.0 279 63.1
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 1.1e-77 294.3 260 64.2
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 5.4e-77 292.0 271 62.4
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 7.1e-77 291.6 249 65.5
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.6e-76 290.4 273 62.6
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 4.6e-76 288.9 205 74.1
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 7.8e-76 288.1 310 57.7
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.3e-75 287.3 276 60.9
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 1.3e-75 287.3 205 74.6
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 3.9e-75 285.8 276 59.8
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 3.9e-75 285.8 276 59.8
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 8.6e-75 284.6 226 67.7
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 2.0e-71 273.5 184 76.1
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 3.4e-71 272.7 224 67.9
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 4.4e-71 272.3 275 58.9
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 2.2e-70 270.0 277 59.9
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 3.8e-70 269.2 354 49.4
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 2.4e-69 266.5 245 61.6
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 1.2e-63 247.7 280 55.4
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 3.4e-63 246.1 169 75.7
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 1.3e-62 244.2 239 55.2
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 1.9e-61 240.4 252 55.6
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 1.6e-60 237.3 205 65.9
SEGI_02924 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 3.5e-60 236.1 252 55.6
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.3e-57 227.6 244 55.3
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.1e-57 226.9 247 53.8
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.1e-57 226.9 247 53.8
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 2.1e-57 226.9 158 75.3
PSO339G2334 Papaver somniferum HOM05D003675 ORTHO05D004318 6.2e-57 225.3 161 72.0
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.7e-54 217.2 277 47.3
CBR_g27773 Chara braunii HOM05D003675 ORTHO05D004318 1.1e-53 214.5 186 60.2
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.6e-52 210.7 280 48.6
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.1e-52 210.3 166 65.1
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 2.5e-50 203.4 273 49.1
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 7.4e-50 201.8 355 45.4
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 3.7e-49 199.5 134 76.9
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 6.2e-49 198.7 124 83.1
SHI20673 Sapria himalayana HOM05D003675 ORTHO05D004318 2.6e-47 193.4 161 61.5
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 2.5e-42 176.8 276 44.6
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 3.3e-42 176.4 308 42.2
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 5.7e-42 175.6 183 56.8
HPP92_010709 Vanilla planifolia HOM05D003675 ORTHO05D004318 5.0e-38 162.5 121 71.1
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.5e-34 151.0 102 76.5
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 6.3e-33 145.6 121 60.3
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 3.8e-30 136.3 205 45.4
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 3.9e-19 99.8 129 41.9
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-19 99.0 59 79.7
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.5e-18 97.8 129 40.3
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.3e-18 96.7 129 38.8
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 9.7e-18 95.1 129 40.3
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.4e-16 91.3 129 37.2
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 2.4e-16 90.5 127 39.4
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.4e-16 90.5 114 41.2
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 3.8e-14 83.2 107 43.0
Nitab4.5_0005814g0050 Nicotiana tabacum HOM05D003675 ORTHO05D004318 3.0e-11 73.6 52 73.1


User provided reference genes

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