Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 2.0e-113 412.5 218 100.0
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 1.3e-59 233.8 188 63.3
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.3e-58 228.4 183 63.4
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.6e-57 226.1 193 60.6
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 2.6e-57 226.1 200 57.5
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 7.6e-57 224.6 212 52.4
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 2.2e-56 223.0 202 55.4
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 4.9e-56 221.9 202 55.0
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 6.4e-56 221.5 204 53.9
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 8.4e-56 221.1 204 53.4
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 1.9e-55 219.9 205 57.6
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.9e-55 219.9 204 53.4
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 3.2e-55 219.2 188 58.5
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 5.5e-55 218.4 205 53.7
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 1.2e-54 217.2 189 57.1
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 2.7e-54 216.1 212 55.7
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 2.3e-53 213.0 195 55.9
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 3.0e-53 212.6 212 50.0
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 5.1e-53 211.8 195 55.4
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 8.7e-53 211.1 206 53.9
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-52 210.7 212 49.5
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.9e-52 209.9 212 49.1
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.3e-52 208.8 199 52.3
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.6e-52 208.4 215 49.8
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 7.4e-52 208.0 204 54.4
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 2.1e-51 206.5 187 57.8
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 2.8e-51 206.1 204 51.5
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.7e-51 205.7 208 52.9
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.1e-50 204.1 203 54.2
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.1e-50 204.1 195 54.9
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 3.1e-50 202.6 202 51.5
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 4.0e-50 202.2 207 50.7
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 5.3e-50 201.8 207 53.6
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 9.0e-50 201.1 193 54.9
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.5e-49 200.3 207 53.1
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 2.0e-49 199.9 194 54.6
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.0e-49 199.9 198 54.0
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.6e-49 199.5 186 54.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 4.5e-49 198.7 206 52.4
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 4.5e-49 198.7 200 53.5
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 7.6e-49 198.0 188 55.9
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 2.2e-48 196.4 184 54.3
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 3.8e-48 195.7 212 50.0
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 3.8e-48 195.7 185 57.3
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 4.9e-48 195.3 194 56.7
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 1.9e-47 193.4 198 52.0
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 1.9e-47 193.4 207 52.2
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 4.2e-47 192.2 204 50.5
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 7.1e-47 191.4 198 52.0
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 6.0e-46 188.3 181 51.4
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 1.1e-44 184.1 201 50.2
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 4.3e-44 182.2 196 48.0
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 4.3e-44 182.2 217 47.0
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 7.4e-44 181.4 208 48.6
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 3.7e-43 179.1 211 47.4
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 3.7e-43 179.1 196 48.0
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 6.3e-43 178.3 212 49.1
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 8.2e-43 177.9 187 52.9
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.1e-42 177.6 210 46.7
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.4e-42 177.2 211 46.4
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 4.1e-42 175.6 203 51.2
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 6.9e-42 174.9 216 46.3
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 1.2e-41 174.1 210 45.7
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 1.5e-41 173.7 210 45.7
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 1.5e-41 173.7 212 47.2
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 7.6e-41 171.4 208 48.6
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.0e-40 171.0 208 48.1
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 1.6e-38 163.7 212 45.8
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 2.7e-38 162.9 203 44.8
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 3.6e-38 162.5 282 35.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 2.3e-37 159.8 204 44.1
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 5.1e-37 158.7 203 45.3
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 8.7e-37 157.9 205 45.4
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 8.7e-37 157.9 201 43.8
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 1.5e-36 157.1 188 48.4
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.9e-36 156.8 227 41.0
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.9e-36 156.8 193 46.6
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 4.3e-36 155.6 183 49.7
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 5.7e-36 155.2 216 44.0
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 2.2e-35 153.3 212 44.8
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 2.2e-35 153.3 213 43.7
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 2.2e-35 153.3 203 43.3
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 4.8e-35 152.1 212 44.3
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 1.1e-34 151.0 223 41.7
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 1.1e-34 151.0 223 41.7
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-34 151.0 192 46.9
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 1.4e-34 150.6 224 42.4
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.4e-34 150.6 225 41.8
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.8e-34 150.2 192 46.9
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.8e-34 150.2 196 43.4
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 2.4e-34 149.8 190 45.8
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 4.1e-34 149.1 215 42.3
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.3e-34 148.7 215 43.7
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 9.1e-34 147.9 212 43.4
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 1.0e-32 144.4 150 52.7
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 8.5e-32 141.4 218 42.7
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.1e-31 141.0 195 42.1
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 1.1e-31 141.0 195 42.1
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 1.1e-31 141.0 215 41.4
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.1e-31 141.0 209 42.6
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.7e-30 136.3 145 51.0
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 3.0e-29 132.9 125 52.0
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 1.0e-24 117.9 215 37.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 3.8e-24 115.9 202 38.1
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 3.8e-24 115.9 121 49.6
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 1.4e-23 114.0 215 36.3
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.9e-23 113.6 104 50.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.6e-22 110.5 177 36.7
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 3.3e-20 102.8 177 34.5
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 5.7e-20 102.1 90 58.9
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.3e-19 100.9 114 47.4
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 3.7e-19 99.4 78 57.7
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 4.8e-19 99.0 151 43.7
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 2.6e-12 76.6 131 34.4
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 2.8e-11 73.2 69 58.0
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 3.5e-09 66.2 54 57.4
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 4.5e-09 65.9 48 64.6
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 4.5e-09 65.9 65 52.3
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 3.2e-07 59.7 89 40.4


User provided reference genes

Program Settings