Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 3.6e-175 618.2 332 100.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 5.6e-144 514.6 322 90.1
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.4e-117 425.6 381 65.6
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 4.5e-117 425.2 381 65.6
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.9e-116 422.5 381 65.1
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.9e-116 421.8 380 65.8
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 7.1e-115 417.9 382 63.1
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 4.6e-114 415.2 381 64.3
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 7.9e-114 414.5 380 62.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.0e-113 414.1 381 64.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-113 413.7 382 63.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.3e-113 412.9 379 63.1
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.5e-112 410.2 381 62.2
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.5e-112 409.5 380 61.6
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 9.7e-112 407.5 381 62.7
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.2e-111 406.4 381 64.3
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.2e-111 406.4 380 61.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.2e-111 404.4 381 62.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-110 404.1 378 64.8
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 1.1e-110 404.1 379 61.2
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-110 403.7 379 64.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-110 403.7 322 70.2
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.8e-110 403.3 380 61.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.4e-110 402.9 381 62.2
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 6.9e-110 401.4 378 64.3
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.2e-109 400.6 380 63.9
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.9e-109 398.3 379 61.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.0e-108 397.5 380 61.3
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.0e-108 397.5 381 61.9
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.3e-108 397.1 322 69.6
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 4.6e-106 388.7 380 58.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 3.9e-105 385.6 380 58.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.1e-105 385.2 381 59.3
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 6.7e-105 384.8 381 60.6
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.5e-104 383.6 381 61.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.5e-104 383.6 379 59.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.3e-104 382.5 379 59.4
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 5.7e-104 381.7 380 59.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 2.2e-103 379.8 318 67.0
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 6.3e-103 378.3 381 59.6
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 6.3e-103 378.3 380 59.5
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.4e-102 377.1 379 59.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.8e-102 376.7 351 62.4
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.8e-102 376.7 363 60.3
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 6.9e-102 374.8 380 58.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 2.6e-101 372.9 380 57.9
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 4.5e-101 372.1 362 59.7
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 7.7e-101 371.3 378 59.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.7e-101 371.3 383 58.5
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 7.7e-101 371.3 378 59.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.2e-100 369.8 379 57.8
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.9e-100 369.4 414 54.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.8e-100 369.0 387 59.2
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.8e-100 369.0 378 59.3
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.0e-100 368.6 379 57.8
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 5.0e-100 368.6 381 58.5
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 2.5e-99 366.3 381 58.3
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.2e-99 365.9 378 57.7
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 9.4e-99 364.4 379 58.0
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-98 362.8 460 52.4
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 2.7e-98 362.8 322 64.3
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 3.6e-98 362.5 379 57.3
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.7e-98 362.1 322 64.6
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.8e-97 360.1 380 57.4
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.0e-97 359.4 379 57.0
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 3.0e-97 359.4 380 57.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 3.0e-97 359.4 380 57.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.1e-97 358.6 379 57.5
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 5.1e-97 358.6 379 57.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 6.7e-97 358.2 379 57.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.0e-96 356.7 362 59.1
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.8e-95 352.8 344 59.0
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 6.3e-95 351.7 378 56.3
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 8.2e-95 351.3 379 56.2
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.4e-94 350.5 379 54.9
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 3.1e-94 349.4 380 55.8
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 4.1e-94 349.0 380 55.5
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.3e-94 348.6 380 55.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 6.9e-94 348.2 378 56.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 6.9e-94 348.2 377 55.2
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 2.0e-93 346.7 380 54.5
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.5e-93 345.5 323 61.3
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.0e-92 344.4 379 54.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 2.2e-92 343.2 344 57.3
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 1.4e-91 340.5 333 59.2
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-91 340.5 360 59.2
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-91 340.5 320 61.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.4e-91 340.5 320 61.6
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 5.5e-91 338.6 383 54.3
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 5.5e-91 338.6 409 54.5
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 7.2e-91 338.2 380 55.0
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.2e-90 337.4 351 60.4
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.1e-90 336.7 347 57.6
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.7e-90 336.3 320 60.9
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 3.6e-90 335.9 379 54.6
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.7e-89 331.6 305 61.3
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 2.0e-88 330.1 382 54.2
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 3.3e-88 329.3 325 59.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 5.7e-88 328.6 381 53.3
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 9.7e-88 327.8 382 54.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 4.8e-87 325.5 382 53.1
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 8.2e-87 324.7 378 52.9
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.8e-86 323.6 363 53.7
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.8e-86 323.6 381 53.0
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.1e-86 322.8 383 52.5
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 9.1e-86 321.2 321 61.4
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.6e-85 320.5 360 53.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.0e-85 320.1 377 54.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.5e-85 319.3 384 52.1
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 7.7e-85 318.2 382 52.9
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 3.2e-83 312.8 382 51.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 7.2e-83 311.6 385 50.9
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 7.2e-83 311.6 309 60.8
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.1e-82 308.5 325 56.9
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.7e-79 300.4 377 51.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.8e-79 299.7 364 51.6
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 3.1e-78 296.2 378 50.5
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 7.0e-78 295.0 380 49.5
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 9.1e-78 294.7 385 49.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.5e-77 292.4 381 50.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.5e-75 286.6 378 49.7
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 6.8e-73 278.5 379 48.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.9e-68 263.1 245 61.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.1e-67 261.2 344 49.7
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.0e-65 254.6 359 48.2
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 4.9e-63 245.7 196 68.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 3.8e-60 236.1 249 57.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 2.1e-58 230.3 248 55.6
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.7e-55 220.7 202 64.4
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.5e-51 206.8 292 48.6
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.6e-48 196.8 324 40.4
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.6e-48 196.8 325 40.3
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 1.7e-47 194.1 379 42.0
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.4e-47 192.2 352 39.5
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.0e-41 172.9 188 54.3
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.6e-37 161.0 161 58.4
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 1.4e-33 147.9 120 65.8
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.9e-32 141.7 127 64.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-30 137.9 147 57.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 3.2e-30 136.7 233 42.1
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.0e-28 130.2 125 59.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.4e-25 121.3 104 62.5
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.4e-24 116.3 127 54.3
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.2e-22 109.8 80 75.0
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.0e-16 90.9 57 77.2
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.5e-16 89.7 99 51.5
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 7.6e-16 89.0 91 58.2
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.1e-12 76.3 55 65.5
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.1e-11 75.1 89 49.4
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.9e-07 60.5 44 70.5
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.4e-07 59.3 236 27.1
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 4.2e-06 56.6 49 67.3


User provided reference genes

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