Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.0e-221 771.5 392 100.0
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 2.1e-174 615.9 381 81.9
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 2.8e-174 615.5 381 82.2
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 1.3e-171 606.7 381 80.6
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 1.3e-171 606.7 381 81.9
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 6.4e-171 604.4 381 81.6
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 8.3e-171 604.0 381 80.3
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 1.8e-170 602.8 381 80.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.7e-169 599.0 381 79.5
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.5e-169 598.6 383 79.9
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 3.0e-168 595.5 381 79.8
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.9e-167 592.8 381 78.7
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.9e-167 592.8 381 78.7
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 7.3e-167 590.9 381 78.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.8e-166 589.0 381 79.0
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 2.8e-166 589.0 381 77.7
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 6.2e-166 587.8 381 78.7
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 8.0e-166 587.4 383 77.0
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 1.8e-165 586.3 381 77.4
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 5.2e-165 584.7 384 78.6
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 6.8e-165 584.3 381 77.7
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 1.5e-164 583.2 381 78.7
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 3.4e-164 582.0 381 77.2
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 4.4e-164 581.6 381 77.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 7.5e-164 580.9 381 76.6
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 7.5e-164 580.9 381 78.0
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 1.3e-163 580.1 381 76.6
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.3e-163 580.1 383 76.5
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 4.9e-163 578.2 383 76.5
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 8.3e-163 577.4 381 77.7
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.9e-162 576.2 381 76.6
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.2e-162 575.5 387 76.5
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 4.1e-162 575.1 381 79.0
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 7.0e-162 574.3 387 78.3
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.6e-161 573.2 381 75.6
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 2.0e-161 572.8 386 75.4
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.0e-160 570.5 381 76.6
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 3.0e-160 568.9 381 76.4
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 6.6e-160 567.8 381 76.1
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 1.5e-159 566.6 389 76.1
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.9e-159 566.2 381 76.1
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 3.3e-159 565.5 387 74.9
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 9.5e-159 563.9 387 75.2
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 9.5e-159 563.9 380 76.1
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 2.8e-158 562.4 381 74.8
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 1.8e-157 559.7 503 62.4
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 2.3e-157 559.3 381 75.9
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 3.4e-156 555.4 368 76.9
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 5.8e-156 554.7 377 75.6
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 5.8e-156 554.7 380 75.3
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 9.8e-156 553.9 380 75.0
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 9.8e-156 553.9 377 75.6
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 1.3e-155 553.5 433 68.4
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 3.7e-155 552.0 380 74.7
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 8.3e-155 550.8 381 75.1
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.1e-154 550.4 381 74.3
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 1.1e-154 550.4 377 75.3
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 2.4e-154 549.3 380 75.0
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 7.1e-154 547.7 377 74.8
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 2.1e-153 546.2 374 74.3
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 1.1e-151 540.4 380 73.4
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 7.3e-151 537.7 377 73.2
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 7.3e-151 537.7 403 70.7
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 1.6e-150 536.6 410 70.0
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 9.9e-148 527.3 408 69.9
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 1.3e-147 526.9 415 67.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 1.1e-146 523.9 381 71.4
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.1e-145 519.6 357 76.2
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 1.7e-144 516.5 381 70.9
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 8.6e-144 514.2 383 71.3
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 1.1e-141 507.3 381 70.1
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 8.9e-141 504.2 381 70.6
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 9.9e-140 500.7 381 70.9
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 8.4e-139 497.7 381 69.0
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 3.5e-137 492.3 381 68.8
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 3.0e-136 489.2 396 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 1.9e-135 486.5 387 66.1
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 4.0e-133 478.8 381 69.3
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.6e-132 474.6 423 62.2
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.2e-129 467.2 414 63.3
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 3.5e-129 465.7 390 63.6
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 2.3e-128 463.0 381 62.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 6.7e-128 461.5 393 63.1
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 3.6e-126 455.7 381 63.8
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.8e-125 453.4 381 62.7
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 2.6e-124 449.5 381 65.4
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 3.4e-124 449.1 381 65.6
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 4.5e-124 448.7 307 75.2
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-119 434.1 374 63.9
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 7.6e-116 421.4 316 70.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 4.9e-115 418.7 346 64.2
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 5.9e-108 395.2 234 85.0
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 7.2e-106 388.3 378 54.2
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 1.5e-103 380.6 386 54.1
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 9.7e-103 377.9 253 76.7
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 3.6e-97 359.4 428 50.2
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 1.0e-88 331.3 268 66.4
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 8.5e-83 311.6 181 87.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.2e-79 301.2 175 87.4
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 9.7e-79 298.1 173 87.3
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 4.5e-76 289.3 199 72.4
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 1.9e-74 283.9 503 39.4
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.2e-71 274.6 184 79.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 2.8e-70 270.0 195 71.8
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.9e-67 260.0 181 73.5
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.5e-66 257.7 181 72.9
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.6e-60 237.7 131 90.1
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 4.5e-60 236.1 178 71.3
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 5.6e-58 229.2 136 84.6
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 9.5e-58 228.4 334 44.6
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 3.6e-57 226.5 129 86.8
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 6.1e-57 225.7 129 85.3
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 5.4e-53 212.6 200 60.5
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 5.4e-53 212.6 200 60.5
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 5.4e-53 212.6 200 60.5
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 9.2e-53 211.8 181 62.4
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-51 208.0 116 87.1
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 3.3e-50 203.4 197 62.9
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.3e-38 164.9 157 55.4
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.2e-36 158.3 89 87.6
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 2.1e-36 157.5 102 76.5
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 7.8e-36 155.6 86 90.7
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 3.0e-35 153.7 83 91.6
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 1.9e-34 151.0 116 64.7
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 1.2e-33 148.3 92 77.2
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 7.8e-28 129.0 74 79.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.1e-24 118.6 117 52.1
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 5.8e-23 112.8 74 79.7
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.7e-22 111.3 116 56.0
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 2.2e-22 110.9 74 78.4
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.1e-20 104.4 86 62.8
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 4.6e-20 103.2 97 56.7
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 6.6e-19 99.4 91 61.5
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 1.9e-18 97.8 205 35.6
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.2e-13 80.1 57 68.4
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.5e-10 71.6 141 35.5
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.5e-10 71.6 73 50.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 1.3e-06 58.5 132 34.8


User provided reference genes

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