Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.4e-192 676.0 322 100.0
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.9e-177 625.2 321 90.7
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 3.2e-176 621.7 314 92.0
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-173 613.2 321 89.1
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 1.9e-173 612.5 311 90.0
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.1e-172 609.0 321 87.5
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.8e-172 608.6 321 88.8
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.6e-172 608.2 320 89.1
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.8e-171 605.9 320 88.4
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 6.8e-171 604.0 319 88.7
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 6.8e-171 604.0 319 89.0
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 8.9e-171 603.6 321 86.3
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 8.9e-171 603.6 321 87.5
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 8.9e-171 603.6 321 86.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 1.5e-170 602.8 319 88.7
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 4.4e-170 601.3 318 88.4
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 7.5e-170 600.5 310 88.7
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.3e-169 599.7 320 88.4
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 2.9e-169 598.6 316 88.0
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 1.9e-168 595.9 319 86.5
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 3.2e-168 595.1 316 87.3
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 3.2e-168 595.1 321 85.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 2.1e-167 592.4 314 87.9
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 6.0e-167 590.9 309 87.1
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-166 590.1 314 86.0
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 1.0e-166 590.1 314 86.0
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.7e-166 589.3 321 84.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 2.3e-166 589.0 309 86.7
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 2.3e-166 589.0 309 86.7
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.6e-166 587.4 323 85.1
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.1e-165 586.6 321 85.7
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.5e-165 586.3 321 85.7
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 7.3e-165 583.9 310 87.7
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 9.5e-165 583.6 313 85.9
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.2e-164 583.2 321 84.7
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 2.1e-164 582.4 314 86.0
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 2.8e-164 582.0 321 84.7
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.6e-164 581.6 313 86.3
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 4.7e-164 581.3 321 85.7
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.1e-163 580.1 312 86.9
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 1.1e-163 580.1 310 86.5
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 1.1e-163 580.1 321 84.7
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 2.3e-163 578.9 322 84.2
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 2.3e-163 578.9 322 84.2
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 2.3e-163 578.9 322 84.2
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 2.3e-163 578.9 311 85.5
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.3e-163 578.9 317 85.2
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 3.1e-163 578.6 321 83.8
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 3.1e-163 578.6 312 86.9
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.1e-163 578.6 312 86.9
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 3.1e-163 578.6 321 84.1
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 4.0e-163 578.2 321 84.4
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 4.0e-163 578.2 312 86.9
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 4.0e-163 578.2 312 86.9
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.0e-163 578.2 323 85.1
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 4.0e-163 578.2 323 85.1
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 8.9e-163 577.0 314 85.4
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.2e-162 576.6 310 84.5
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.5e-162 576.2 314 84.7
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 2.0e-162 575.9 312 84.6
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 7.6e-162 573.9 321 83.5
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 9.9e-162 573.5 315 83.8
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 9.9e-162 573.5 312 86.5
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 9.9e-162 573.5 314 84.1
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 1.7e-161 572.8 312 85.6
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.7e-161 572.8 313 84.3
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 2.2e-161 572.4 314 85.4
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 2.2e-161 572.4 308 85.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 6.4e-161 570.9 322 82.9
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 6.4e-161 570.9 322 82.9
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 313 84.0
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.4e-160 569.7 313 84.0
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.4e-160 569.7 316 82.6
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 2.4e-160 568.9 313 84.0
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 3.2e-160 568.5 316 82.6
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 4.1e-160 568.2 321 83.2
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 4.1e-160 568.2 308 86.4
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 7.1e-160 567.4 319 83.4
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 9.2e-160 567.0 308 84.1
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 2.1e-159 565.8 323 82.4
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 3.5e-159 565.1 308 85.1
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 4.6e-159 564.7 310 83.9
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.0e-158 563.5 322 82.9
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.0e-158 563.5 310 83.5
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.7e-158 562.8 310 84.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 8.6e-158 560.5 309 85.1
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 1.9e-157 559.3 302 85.8
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 9.6e-157 557.0 310 84.5
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 4.7e-156 554.7 310 81.9
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 4.7e-156 554.7 368 73.4
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 1.4e-155 553.1 310 83.2
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.4e-155 553.1 311 82.6
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.4e-155 553.1 311 81.0
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 6.8e-155 550.8 320 80.9
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 2.0e-154 549.3 316 79.1
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 4.4e-154 548.1 321 80.7
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 5.8e-154 547.7 316 78.2
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 4.9e-153 544.7 313 81.8
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.4e-152 543.1 313 81.5
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 1.9e-152 542.7 312 80.4
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 9.3e-152 540.4 311 81.0
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 1.0e-150 537.0 309 80.6
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 1.0e-150 537.0 312 80.4
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 1.1e-149 533.5 314 77.7
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 1.1e-149 533.5 343 74.6
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.6e-149 530.4 316 80.1
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 2.4e-147 525.8 319 75.5
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 5.8e-146 521.2 275 88.7
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.9e-145 518.1 279 87.1
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 1.1e-144 516.9 291 80.4
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 3.5e-143 511.9 314 74.8
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 1.5e-141 506.5 274 84.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.3e-141 505.0 302 74.8
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 3.4e-138 495.4 321 70.7
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 8.1e-132 474.2 251 85.7
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.9e-129 464.9 333 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 3.5e-127 458.8 305 68.5
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.3e-126 456.8 312 66.0
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.3e-126 456.8 312 66.0
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 2.3e-126 456.1 308 65.6
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 4.3e-117 425.2 224 87.1
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 3.1e-115 419.1 307 60.9
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 4.1e-107 392.1 313 60.1
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 3.7e-100 369.0 244 69.3
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 3.2e-96 355.9 215 75.3
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.0e-90 336.7 315 52.1
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 5.0e-81 305.4 344 44.2
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 1.3e-68 264.2 360 39.7
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.2e-52 210.3 123 74.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 3.5e-34 149.8 82 85.4
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 1.4e-30 137.9 89 77.5
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.1e-23 112.1 84 70.2
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 8.4e-20 102.1 68 70.6
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 2.4e-14 84.0 43 83.7
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 3.1e-14 83.6 41 87.8
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 4.0e-14 83.2 42 81.0
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 5.3e-14 82.8 52 75.0
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 1.1e-08 65.1 59 54.2


User provided reference genes

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