Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A285G52 Lonicera japonica HOM05D002352 ORTHO05D003724 7.2e-47 190.3 99 100.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 5.4e-34 147.5 77 97.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-32 142.9 81 88.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.9e-32 141.7 75 96.0
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 2.9e-32 141.7 82 89.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-32 141.7 86 83.7
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 8.6e-32 140.2 75 94.7
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.1e-31 139.8 78 89.7
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.5e-31 139.4 77 92.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.9e-31 139.0 75 94.7
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.5e-31 138.7 76 93.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.5e-31 138.7 75 93.3
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.3e-31 138.3 76 93.4
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 3.3e-31 138.3 82 85.4
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 4.3e-31 137.9 82 86.6
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 4.3e-31 137.9 76 93.4
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 5.6e-31 137.5 75 92.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 5.6e-31 137.5 73 95.9
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 7.3e-31 137.1 77 92.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 7.3e-31 137.1 75 92.0
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 7.3e-31 137.1 82 85.4
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 9.5e-31 136.7 82 85.4
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.6e-30 136.0 82 82.9
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.1e-30 135.6 75 90.7
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 2.1e-30 135.6 82 84.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.8e-30 135.2 82 82.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.7e-30 134.4 82 84.1
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 4.7e-30 134.4 82 81.7
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 6.1e-30 134.0 75 88.0
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 8.0e-30 133.7 76 85.5
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 8.0e-30 133.7 82 82.9
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 8.0e-30 133.7 82 81.7
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 8.0e-30 133.7 82 81.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.0e-29 133.3 77 87.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.0e-29 133.3 75 89.3
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.4e-29 132.9 77 84.4
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.8e-29 132.5 75 88.0
Actinidia39445 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.3e-29 132.1 75 90.7
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.3e-29 132.1 75 89.3
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.3e-29 132.1 75 90.7
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.0e-29 131.7 75 89.3
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.0e-29 131.7 75 88.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 4.0e-29 131.3 76 81.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.0e-29 131.3 82 79.3
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.0e-29 131.3 75 89.3
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.0e-29 131.3 72 94.4
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 4.0e-29 131.3 75 89.3
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 5.2e-29 131.0 75 85.3
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 5.2e-29 131.0 75 85.3
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 5.2e-29 131.0 82 80.5
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 5.2e-29 131.0 82 80.5
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 6.8e-29 130.6 82 79.3
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 6.8e-29 130.6 82 79.3
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 6.8e-29 130.6 82 79.3
Lalb_Chr21g0313511 Lupinus albus HOM05D002352 ORTHO05D003724 6.8e-29 130.6 76 86.8
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 6.8e-29 130.6 75 88.0
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 6.8e-29 130.6 82 81.7
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.8e-29 130.6 82 79.3
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.2e-28 129.8 82 79.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.5e-28 129.4 82 78.0
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.5e-28 129.4 82 76.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.5e-28 129.4 82 78.0
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.5e-28 129.4 75 86.7
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.5e-28 129.4 82 79.3
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.5e-28 129.4 82 80.5
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.0e-28 129.0 82 79.3
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.6e-28 128.6 82 78.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.6e-28 128.6 75 86.7
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.6e-28 128.6 82 79.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.6e-28 128.6 82 80.5
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 4.4e-28 127.9 75 85.3
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 4.4e-28 127.9 82 79.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.4e-28 127.9 75 82.7
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 4.4e-28 127.9 82 78.0
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 5.7e-28 127.5 75 88.0
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 5.7e-28 127.5 75 85.3
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 7.5e-28 127.1 75 85.3
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 7.5e-28 127.1 75 85.3
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 7.5e-28 127.1 75 85.3
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 7.5e-28 127.1 82 76.8
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 9.8e-28 126.7 75 82.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.3e-27 126.3 82 79.3
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.3e-27 126.3 84 77.4
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.7e-27 125.9 75 84.0
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.9e-27 125.2 84 76.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 2.9e-27 125.2 75 84.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 4.9e-27 124.4 75 82.7
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 6.4e-27 124.0 82 74.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.3e-27 123.6 75 78.7
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.1e-26 123.2 75 81.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.1e-26 123.2 75 81.3
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.8e-26 122.5 75 80.0
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.8e-26 122.5 75 80.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.8e-26 122.5 75 80.0
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 4.1e-26 121.3 75 80.0
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 9.2e-26 120.2 75 80.0
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.2e-25 119.8 82 72.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.6e-25 119.4 82 72.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.7e-25 118.6 82 70.7
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 4.6e-25 117.9 69 84.1
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.9e-25 117.5 86 69.8
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 7.8e-25 117.1 74 75.7
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.0e-24 116.7 75 77.3
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.0e-24 116.7 75 77.3
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.3e-24 116.3 75 77.3
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.7e-24 115.9 77 75.3
SalBow8G0115 Salvia bowleyana HOM05D000807 ORTHO05D000662 2.3e-24 115.5 76 80.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 3.9e-24 114.8 64 92.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.9e-24 114.8 67 85.1
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.9e-24 114.8 67 85.1
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 5.0e-24 114.4 82 69.5
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.6e-24 114.0 75 76.0
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 4.3e-23 111.3 75 70.7
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 7.3e-23 110.5 65 84.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.2e-22 109.8 66 81.8
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 5.2e-21 104.4 75 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 8.9e-21 103.6 75 68.0
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.0e-20 102.4 75 65.3
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.4e-20 101.7 75 65.3
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 9.8e-20 100.1 75 69.3
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-18 95.9 59 81.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.0e-17 92.4 110 50.9
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 7.8e-17 90.5 75 54.7
Aa31LG5G14880 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.1e-15 86.7 78 59.0
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.3e-13 79.0 65 67.7
Aa31LG5G19350 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.0e-12 75.9 71 57.7
MBI19_g04169_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 6.6e-08 60.8 36 77.8
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 2.1e-06 55.8 71 43.7


User provided reference genes

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