Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 0.0e+00 1630.9 823 100.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.9e-310 1068.9 774 71.4
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.7e-298 1029.2 785 67.6
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 4.9e-298 1027.7 774 68.1
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 1.4e-289 999.6 773 66.2
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.6e-288 996.1 774 66.5
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 6.6e-287 990.7 775 66.5
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.9e-286 989.2 861 62.0
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 4.0e-284 981.5 776 65.2
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 5.2e-284 981.1 774 65.6
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 1.2e-283 979.9 775 67.0
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.6e-283 978.8 775 66.1
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 3.4e-283 978.4 774 65.0
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 3.4e-283 978.4 775 66.3
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 2.2e-282 975.7 774 64.9
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 3.8e-282 974.9 777 65.1
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 4.6e-280 968.0 774 64.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.0e-279 965.3 777 65.0
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.0e-279 965.3 787 64.3
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 6.6e-279 964.1 775 64.4
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.7e-279 963.8 779 64.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 1.5e-278 963.0 792 64.0
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 9.6e-278 960.3 774 66.1
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 1.3e-277 959.9 774 63.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.6e-277 959.5 772 64.0
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.5e-275 953.0 776 65.2
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 3.4e-275 951.8 774 64.0
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 7.6e-275 950.7 774 64.0
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.7e-274 949.5 770 63.8
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 3.8e-274 948.3 776 62.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 3.2e-273 945.3 774 62.0
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 4.2e-273 944.9 774 63.3
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.8e-269 932.2 749 64.5
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 3.6e-269 931.8 775 63.5
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 6.2e-269 931.0 782 61.4
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 2.6e-267 925.6 774 60.9
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 3.4e-267 925.2 785 62.2
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.4e-267 925.2 772 61.9
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.7e-266 922.9 776 62.5
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 6.4e-266 921.0 774 63.2
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.4e-265 919.8 775 62.7
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 2.7e-264 915.6 770 60.4
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 5.1e-263 911.4 755 63.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 5.1e-263 911.4 774 61.2
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.5e-262 909.1 785 59.5
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 4.3e-262 908.3 777 62.4
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 7.4e-262 907.5 774 60.6
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 6.2e-261 904.4 718 64.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.4e-260 902.5 779 62.9
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.1e-260 902.1 830 58.6
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 4.0e-260 901.7 795 58.5
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 5.3e-260 901.4 777 62.8
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 5.8e-259 897.9 758 60.2
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.4e-257 893.3 775 61.0
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 7.1e-257 891.0 797 57.6
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 9.3e-257 890.6 775 60.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 9.3e-257 890.6 775 60.3
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.6e-256 889.8 779 59.9
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.5e-256 888.6 785 58.9
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 6.0e-256 887.9 785 58.9
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.0e-255 887.1 785 58.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.3e-255 885.9 770 61.2
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.1e-254 883.6 790 58.0
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.9e-254 882.9 785 58.1
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.3e-254 882.1 785 58.9
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 7.4e-254 880.9 785 58.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.8e-253 879.0 794 57.4
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.7e-253 878.6 781 58.0
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 8.2e-253 877.5 774 58.5
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 9.0e-252 874.0 774 58.5
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.9e-250 869.0 772 59.1
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 8.4e-250 867.5 771 59.3
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.2e-249 865.5 783 57.2
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.1e-247 858.2 742 59.2
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.5e-246 855.9 744 58.9
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.4e-246 854.4 772 58.4
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-244 850.5 811 55.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.4e-244 850.1 774 58.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.2e-243 847.0 874 53.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.5e-243 846.7 713 62.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.0e-243 846.3 772 58.0
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.0e-242 841.6 769 57.5
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 4.2e-233 812.0 779 55.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.7e-216 756.1 744 55.0
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 3.5e-211 739.2 778 52.4
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 8.3e-205 718.0 784 50.8
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.7e-203 713.0 557 66.4
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.0e-194 684.5 535 63.0
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 8.9e-175 618.2 518 61.8
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 1.5e-174 617.5 771 45.0
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.6e-166 588.6 577 54.2
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.7e-162 577.4 480 65.0
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 8.7e-154 548.5 752 44.4
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-152 544.7 393 68.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.2e-140 503.4 507 53.6
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-139 500.7 427 61.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.1e-135 486.9 473 59.2
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.0e-117 428.7 733 36.8
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.2e-115 421.8 795 35.3
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 2.7e-94 350.9 399 50.1
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 9.5e-92 342.4 389 50.9
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 2.3e-90 337.8 377 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 1.2e-89 335.5 712 31.0
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 7.5e-89 332.8 385 47.0
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.2e-83 315.5 256 63.7
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.0e-82 310.5 710 30.4
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.7e-72 277.3 205 68.8
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.2e-67 262.3 238 54.6
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.3e-61 242.3 191 61.8
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 7.1e-55 219.9 392 34.7
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.7e-51 207.2 174 65.5
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 2.0e-49 201.8 325 40.9
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 8.7e-45 186.4 197 50.8
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.4e-34 152.5 370 29.7
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 5.3e-34 150.6 196 39.8
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.7e-32 145.6 167 48.5
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.9e-31 142.1 128 59.4
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 3.2e-31 141.4 187 43.9
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 5.5e-31 140.6 86 76.7
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.2e-30 139.4 80 80.0
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-29 136.0 80 80.0
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.1e-28 132.9 113 55.8
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-28 131.3 102 60.8
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.6e-27 129.0 382 26.2
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 2.8e-27 128.3 109 56.0
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 3.7e-27 127.9 145 53.1
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.7e-27 127.9 80 75.0
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-25 122.5 84 71.4
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.6e-25 120.2 81 71.6
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-20 105.9 102 55.9
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 5.7e-20 104.0 176 39.2
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.2e-19 100.1 56 82.1
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.3e-16 92.8 129 45.0
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-16 92.4 58 70.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.1e-15 89.7 62 69.4
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.1e-15 89.7 62 69.4
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-15 88.2 58 67.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.1e-14 85.5 80 57.5
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 1.0e-13 83.2 151 35.8
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-12 78.2 73 53.4
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-12 78.2 63 60.3
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.8e-10 72.4 476 20.4
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 2.6e-09 68.6 114 36.0
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 3.8e-08 64.7 46 67.4
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 2.5e-07 62.0 148 30.4
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.5e-07 60.8 71 47.9
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.2e-06 59.7 31 83.9
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-06 59.3 80 43.8
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 2.1e-06 58.9 32 78.1


User provided reference genes

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