Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 1.7e-284 981.9 468 100.0
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 2.0e-187 659.4 449 71.0
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 3.2e-185 652.1 446 73.1
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 9.2e-185 650.6 445 71.7
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.9e-182 642.9 463 68.9
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.6e-182 641.3 450 69.6
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 1.4e-180 636.7 437 70.0
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.4e-180 636.7 437 70.3
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.2e-180 634.8 437 70.0
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.5e-179 633.3 460 67.2
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 2.0e-179 632.9 469 68.4
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.4e-179 631.7 431 71.9
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 7.6e-179 630.9 461 68.1
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.3e-178 630.2 469 67.0
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 6.4e-178 627.9 461 67.9
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.4e-177 626.7 463 67.6
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.4e-177 626.7 460 67.8
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 3.2e-177 625.5 461 67.7
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.2e-176 623.6 442 69.2
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 2.7e-176 622.5 460 67.2
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 7.8e-176 620.9 450 67.8
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 1.0e-175 620.5 409 72.1
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.7e-175 619.8 425 72.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 3.9e-175 618.6 461 67.2
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.1e-175 618.2 435 68.5
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 5.1e-175 618.2 462 66.2
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 5.1e-175 618.2 438 69.4
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.1e-174 617.1 458 66.4
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 1.5e-174 616.7 461 67.5
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 9.6e-174 614.0 462 67.3
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.3e-173 613.6 437 68.6
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 4.8e-173 611.7 438 69.6
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 6.2e-173 611.3 413 70.2
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.1e-172 610.5 408 73.0
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 1.4e-172 610.1 447 67.3
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.4e-172 610.1 464 65.1
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.8e-172 609.8 447 67.3
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.1e-172 609.0 454 66.5
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 4.0e-172 608.6 431 68.2
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.0e-172 608.6 466 66.7
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 5.3e-172 608.2 411 70.3
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 9.0e-172 607.4 463 66.7
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 9.9e-171 604.0 495 64.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.1e-169 600.5 462 65.6
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 1.9e-169 599.7 446 66.1
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 2.4e-169 599.4 422 67.5
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 5.4e-169 598.2 400 70.5
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 2.1e-168 596.3 423 69.5
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 3.5e-168 595.5 470 63.4
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.5e-168 595.5 430 68.1
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 4.6e-168 595.1 434 67.3
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 7.8e-168 594.3 421 67.5
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 1.0e-167 594.0 462 65.2
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.7e-167 593.2 440 65.7
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 5.1e-167 591.7 417 68.8
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 5.1e-167 591.7 461 64.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 5.6e-166 588.2 423 66.9
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 3.6e-165 585.5 435 65.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 8.1e-165 584.3 435 65.5
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 8.1e-165 584.3 426 67.4
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.1e-164 583.9 423 66.7
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 1.8e-164 583.2 419 67.3
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 3.1e-164 582.4 427 67.0
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 3.1e-164 582.4 464 62.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 9.0e-164 580.9 430 66.0
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.5e-163 580.1 467 63.6
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.0e-163 579.7 404 69.8
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.6e-163 579.3 420 68.3
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 3.4e-163 578.9 431 65.7
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 4.5e-163 578.6 433 65.4
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 4.5e-163 578.6 438 64.8
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 4.5e-163 578.6 439 64.9
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 4.5e-163 578.6 454 64.8
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 5.8e-163 578.2 436 65.1
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 5.8e-163 578.2 436 65.1
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 5.8e-163 578.2 371 73.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 7.6e-163 577.8 433 65.1
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 2.9e-162 575.9 426 64.3
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 4.9e-162 575.1 455 63.3
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.7e-160 569.3 481 63.0
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 3.7e-157 558.9 407 66.3
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 6.2e-157 558.1 425 64.0
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 2.4e-156 556.2 398 68.6
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.5e-153 546.2 475 61.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.1e-150 537.3 450 61.8
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.0e-146 524.2 451 59.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 1.9e-145 520.0 407 63.1
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 8.7e-143 511.1 355 70.1
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.2e-139 500.7 337 70.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.9e-135 485.7 329 71.7
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 4.3e-134 482.3 425 55.5
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 2.4e-132 476.5 447 52.6
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 4.5e-131 472.2 437 54.7
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 4.5e-131 472.2 324 73.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 9.4e-129 464.5 324 70.4
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.7e-128 462.2 419 57.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 5.7e-126 455.3 441 57.6
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 4.2e-121 439.1 433 54.5
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.6e-118 429.9 339 64.0
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.4e-116 423.3 398 53.3
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.2e-110 404.4 418 49.3
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 2.7e-107 393.3 400 50.0
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.0e-90 338.2 285 61.8
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 4.7e-88 329.3 273 59.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.0e-86 323.9 278 55.4
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 1.1e-84 318.2 180 81.7
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.6e-83 312.8 171 84.8
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.6e-83 312.8 171 84.8
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 2.8e-80 303.5 427 41.2
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 9.2e-76 288.5 495 39.6
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.2e-75 288.1 335 48.1
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 2.8e-72 276.9 381 42.3
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.7e-69 267.7 146 84.9
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 5.4e-52 209.5 256 51.2
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.1e-51 207.6 141 70.9
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.3e-50 204.1 127 77.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.1e-49 201.8 103 90.3
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.6e-43 181.4 101 78.2
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.1e-41 175.3 115 74.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 4.3e-41 173.3 293 36.2
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.5e-38 164.9 93 83.9
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.9e-37 160.6 89 82.0
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 1.2e-35 155.2 99 71.7
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 1.7e-29 134.8 120 55.0
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 7.2e-28 129.4 80 67.5
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.6e-19 101.7 194 37.1
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.4e-18 98.6 238 33.6
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 6.5e-13 79.7 120 40.8
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 4.7e-11 73.6 94 40.4
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 5.7e-09 66.6 216 27.3
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.7e-08 65.1 406 20.4
Aqoxy2G03169 Aquilegia oxysepala HOM05D002999 ORTHO05D003137 4.8e-08 63.5 352 23.3
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 4.8e-08 63.5 208 25.0
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 6.3e-08 63.2 369 22.0
Zm00001eb354420 Zea mays HOM05D002999 ORTHO05D003137 8.2e-08 62.8 242 23.6
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.8e-07 61.6 235 23.8
Haze_27091 Corylus avellana HOM05D002999 ORTHO05D003137 2.4e-07 61.2 248 25.0
CBR_g29307 Chara braunii HOM05D002999 ORTHO05D003137 5.3e-07 60.1 267 24.7
Potri.014G136000 Populus trichocarpa HOM05D002999 ORTHO05D003137 5.3e-07 60.1 238 24.4
HanXRQChr10g0283101 Helianthus annuus HOM05D002999 ORTHO05D003137 1.2e-06 58.9 362 21.5
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.2e-06 58.9 367 21.8
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 2.0e-06 58.2 150 30.0
unitig_749.g14054 Utricularia gibba HOM05D002999 ORTHO05D003137 2.0e-06 58.2 192 26.0
SGA_v2.0_scaffold142G35668 Striga asiatica HOM05D002999 ORTHO05D003137 2.6e-06 57.8 404 20.8
C02p39760 Brassica napus HOM05D002999 ORTHO05D003137 5.9e-06 56.6 362 22.7


User provided reference genes

Program Settings