Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.1e-204 714.9 361 100.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.4e-134 482.3 368 70.7
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.3e-133 480.3 391 65.2
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 2.7e-131 472.6 388 66.0
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 7.7e-131 471.1 358 68.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.7e-128 462.6 387 64.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.0e-127 460.7 396 64.1
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.8e-127 459.9 358 67.3
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 7.5e-126 454.5 372 63.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 9.8e-126 454.1 395 62.8
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.7e-125 453.4 358 66.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.2e-125 453.0 381 64.0
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.8e-125 452.6 365 64.7
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 8.3e-125 451.1 388 62.6
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.4e-124 449.5 387 63.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 3.1e-124 449.1 384 63.8
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 4.1e-124 448.7 393 62.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 7.0e-124 448.0 385 62.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.2e-123 447.2 418 59.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.6e-123 446.8 361 64.5
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.6e-123 446.8 403 61.5
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.0e-123 446.4 369 63.4
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.5e-123 445.7 370 64.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.7e-123 444.5 393 61.6
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.0e-122 444.1 361 64.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.3e-122 443.0 421 59.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.6e-122 441.4 376 61.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.1e-121 440.7 387 60.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.5e-121 440.3 382 62.3
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.5e-121 437.6 390 60.8
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 9.5e-121 437.6 403 60.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.2e-120 437.2 357 64.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.1e-120 436.4 362 63.3
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.8e-120 436.0 361 63.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 6.1e-120 434.9 375 62.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 8.0e-120 434.5 364 63.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.8e-119 433.3 360 62.5
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.8e-119 433.3 388 60.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.0e-119 432.6 354 65.0
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 4.0e-119 432.2 363 62.5
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 5.2e-119 431.8 364 64.3
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.2e-118 430.6 364 62.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.5e-118 430.3 392 60.5
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 4.4e-118 428.7 363 62.8
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 7.5e-118 427.9 361 62.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.5e-118 427.9 371 60.6
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 7.5e-118 427.9 361 62.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.9e-117 426.0 357 61.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 3.7e-117 425.6 369 60.4
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.9e-117 425.2 397 59.7
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.2e-116 422.5 388 60.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.6e-115 420.2 406 58.6
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.6e-115 420.2 389 58.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.0e-115 419.9 363 62.3
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.5e-115 419.1 388 60.1
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.0e-114 417.5 421 56.3
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.3e-114 417.2 361 61.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.3e-114 417.2 283 73.5
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.7e-114 416.8 358 60.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.6e-114 414.8 375 58.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.1e-113 414.1 354 61.6
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.5e-113 413.7 372 59.9
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.3e-113 412.1 351 61.3
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.1e-112 409.8 379 58.8
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 6.2e-112 408.3 352 60.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 8.0e-112 407.9 354 60.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.0e-111 407.5 352 60.5
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.4e-111 407.1 283 73.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-111 407.1 363 61.2
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.8e-111 406.8 361 62.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.3e-111 406.4 364 59.1
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.3e-111 406.4 374 59.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.3e-111 406.4 374 59.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-111 405.2 360 59.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 5.2e-111 405.2 360 59.2
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.4e-110 402.5 363 60.3
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.2e-109 399.8 268 75.0
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 4.9e-109 398.7 374 57.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 8.3e-109 397.9 283 70.3
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.1e-108 397.5 372 59.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.1e-108 397.5 387 55.6
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.9e-108 396.7 370 59.5
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.1e-108 395.6 372 57.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.0e-108 394.8 373 54.7
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.6e-107 393.7 371 58.2
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.7e-107 392.9 377 55.4
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.5e-107 392.5 380 57.4
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 4.6e-107 392.1 365 59.5
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.0e-107 391.7 389 57.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 6.6e-106 388.3 386 55.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 9.5e-105 384.4 288 68.8
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.1e-103 380.9 371 53.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.8e-103 380.2 322 62.1
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 2.3e-103 379.8 288 66.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 3.1e-103 379.4 363 56.7
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.4e-102 375.6 365 55.9
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 5.8e-102 375.2 378 55.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 7.5e-102 374.8 344 59.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 9.8e-102 374.4 372 55.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.8e-102 374.4 351 58.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.3e-101 371.3 349 59.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-100 370.9 369 55.8
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.1e-100 368.2 372 54.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-99 367.1 369 55.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.6e-99 367.1 352 57.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.6e-99 365.5 359 56.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 7.8e-99 364.8 365 55.6
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.0e-98 364.4 367 54.8
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.7e-98 363.6 352 58.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.0e-98 362.8 359 54.3
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.9e-98 362.5 366 53.3
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.9e-98 362.5 275 64.4
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 5.1e-98 362.1 366 56.0
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.6e-98 361.7 371 53.4
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 8.6e-98 361.3 364 56.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.3e-97 359.4 366 55.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.3e-97 359.4 366 55.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.6e-96 355.9 364 56.9
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.2e-96 355.1 366 55.2
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 6.2e-96 355.1 364 55.8
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 8.1e-96 354.8 364 55.8
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 5.2e-95 352.1 364 55.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 8.9e-95 351.3 369 54.5
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-94 350.9 367 54.8
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-93 347.4 369 53.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.3e-93 347.4 369 53.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.3e-93 347.4 364 49.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-93 347.1 368 54.3
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.7e-93 347.1 368 54.3
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 6.4e-93 345.1 368 54.1
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.4e-92 344.0 287 56.4
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.9e-90 335.9 370 52.7
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 9.6e-89 331.3 281 57.7
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-87 326.6 245 69.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.1e-87 326.2 309 59.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.4e-84 315.5 283 60.8
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.0e-82 311.2 356 47.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 3.1e-79 299.7 383 43.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 4.9e-61 239.2 194 64.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 6.9e-55 218.8 243 44.0
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.6e-54 216.9 171 65.5
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-51 206.5 160 65.6
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 6.3e-48 195.7 250 42.8
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.6e-43 179.9 244 44.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.1e-35 154.1 244 42.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-33 147.5 189 47.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.5e-22 110.2 68 75.0
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 7.7e-22 109.0 156 44.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.3e-16 91.7 187 33.7
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.2e-12 76.6 82 51.2
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 6.1e-11 72.8 105 41.0
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 7.0e-07 59.3 97 38.1


User provided reference genes

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