Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 2.0e-158 562.4 282 100.0
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 8.9e-74 281.2 300 55.0
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 1.6e-70 270.4 298 53.7
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 1.1e-68 264.2 286 51.0
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 3.3e-68 262.7 304 49.3
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 3.3e-68 262.7 294 51.7
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 1.2e-67 260.8 292 52.1
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 1.6e-67 260.4 288 50.3
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.0e-67 258.1 284 48.6
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 1.8e-66 256.9 291 50.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.3e-66 256.5 285 48.1
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.2e-66 255.4 284 48.2
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.9e-66 254.6 285 47.7
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 7.5e-65 251.5 293 47.8
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 1.7e-64 250.4 298 51.7
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 6.4e-64 248.4 237 55.7
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 1.1e-63 247.7 294 49.0
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 1.1e-63 247.7 306 47.7
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 4.1e-63 245.7 293 48.8
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 4.1e-63 245.7 295 48.8
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 7.0e-63 245.0 295 48.1
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 1.6e-62 243.8 296 47.6
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 1.6e-62 243.8 296 47.6
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 2.0e-62 243.4 295 48.1
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 4.6e-62 242.3 295 47.8
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 6.0e-62 241.9 296 48.0
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 2.3e-61 240.0 295 48.1
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 2.3e-61 240.0 292 48.6
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 3.9e-61 239.2 302 47.4
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 5.0e-61 238.8 241 52.3
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 6.6e-61 238.4 294 45.9
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 8.6e-61 238.0 318 45.9
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 1.1e-60 237.7 303 47.2
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 2.5e-60 236.5 293 49.5
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 2.5e-60 236.5 237 52.7
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 3.3e-60 236.1 295 45.8
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 4.3e-60 235.7 263 51.0
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 7.3e-60 235.0 296 47.3
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 1.2e-59 234.2 291 48.1
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 1.6e-59 233.8 294 46.9
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 1.6e-59 233.8 302 46.4
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 2.1e-59 233.4 263 50.6
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 2.8e-59 233.0 285 49.8
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 3.6e-59 232.6 284 46.8
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 4.7e-59 232.3 288 47.6
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 1.4e-58 230.7 293 48.5
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 1.8e-58 230.3 219 53.0
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 2.3e-58 229.9 298 47.3
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 2.3e-58 229.9 289 46.0
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 2.3e-58 229.9 239 51.0
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 3.1e-58 229.6 215 54.9
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 3.1e-58 229.6 241 50.2
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 1.2e-57 227.6 298 46.0
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 1.5e-57 227.3 297 47.1
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 2.0e-57 226.9 267 49.8
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 2.0e-57 226.9 287 46.7
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 3.4e-57 226.1 290 48.3
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 4.4e-57 225.7 282 46.5
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 5.8e-57 225.3 264 50.0
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 5.8e-57 225.3 294 43.2
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 7.5e-57 224.9 239 51.0
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 7.5e-57 224.9 301 45.8
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 1.7e-56 223.8 216 53.2
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 2.2e-56 223.4 289 45.7
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 3.7e-56 222.6 303 45.5
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 4.9e-56 222.2 236 50.8
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 4.9e-56 222.2 239 50.2
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 4.9e-56 222.2 347 41.8
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 6.4e-56 221.9 296 44.9
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 2.4e-55 219.9 217 52.5
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 5.4e-55 218.8 219 52.1
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 7.1e-55 218.4 223 52.9
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 7.1e-55 218.4 278 46.8
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.2e-54 217.6 215 52.6
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.1e-54 216.9 223 53.4
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 4.6e-54 215.7 225 50.2
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 7.8e-54 214.9 223 49.8
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 1.0e-53 214.5 282 47.5
TPR.G24522 Trifolium pratense HOM05D005388 ORTHO05D006281 1.0e-53 214.5 212 52.8
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 1.3e-53 214.2 303 44.9
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 1.3e-53 214.2 252 48.8
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 1.7e-53 213.8 252 49.2
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 3.9e-53 212.6 300 44.3
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 3.9e-53 212.6 252 47.6
Ca_19224_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 5.1e-53 212.2 219 52.1
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 1.5e-52 210.7 252 48.4
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 1.5e-52 210.7 252 48.4
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 1.5e-52 210.7 300 43.0
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 1.5e-52 210.7 274 48.5
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 1.9e-52 210.3 227 51.1
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 3.3e-52 209.5 304 44.4
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 4.3e-52 209.1 216 51.4
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 4.3e-52 209.1 302 44.4
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 4.3e-52 209.1 262 48.1
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 4.3e-52 209.1 300 45.0
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 5.6e-52 208.8 262 48.1
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 5.6e-52 208.8 218 51.8
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 1.6e-51 207.2 287 44.9
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 1.4e-50 204.1 216 48.6
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.5e-49 200.7 210 51.0
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 9.9e-49 198.0 232 48.7
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.3e-48 197.6 412 34.7
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 1.4e-47 194.1 274 43.8
Hund02539 Selenicereus undatus HOM05D005388 ORTHO05D006281 1.9e-47 193.7 235 46.4
Haze_05515 Corylus avellana HOM05D005388 ORTHO05D006281 7.8e-46 188.3 316 40.5
Lsat_1_v5_gn_3_44480 Lactuca sativa HOM05D005388 ORTHO05D006281 2.8e-43 179.9 116 69.8
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 1.8e-42 177.2 210 45.2
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 2.0e-41 173.7 260 43.5
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 7.6e-41 171.8 177 50.8
Mapoly0084s0080 Marchantia polymorpha HOM05D005388 ORTHO05D006281 3.8e-40 169.5 204 45.1
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 1.4e-39 167.5 272 41.2
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 3.2e-39 166.4 230 41.3
VMungo0647G0909 Vigna mungo HOM05D005388 ORTHO05D006281 2.3e-37 160.2 254 40.2
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 1.9e-36 157.1 217 40.1
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 2.1e-35 153.7 231 39.4
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 1.1e-34 151.4 149 53.0
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 4.0e-34 149.4 149 52.3
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 4.0e-34 149.4 149 52.3
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 4.0e-34 149.4 149 52.3
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 4.4e-33 146.0 197 43.1
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 1.3e-32 144.4 160 50.6
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 1.7e-32 144.1 145 56.6
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 2.2e-32 143.7 168 48.8
Ca_03362_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 2.9e-32 143.3 103 68.0
DCAR_016081 Daucus carota HOM05D005388 ORTHO05D006281 3.2e-31 139.8 84 73.8
Hund08510 Selenicereus undatus HOM05D005388 ORTHO05D006281 4.2e-31 139.4 159 49.1
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 2.7e-30 136.7 141 51.8
Rhsim04G0088200 Rhododendron simsii HOM05D005388 ORTHO05D006281 2.7e-30 136.7 84 71.4
Sc04g0003960 Simmondsia chinensis HOM05D005388 ORTHO05D006281 3.9e-29 132.9 80 76.2
Haze_13876 Corylus avellana HOM05D005388 ORTHO05D006281 3.6e-27 126.3 84 71.4
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 6.2e-27 125.6 112 60.7
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 1.4e-26 124.4 79 72.2
AagrBONN_evm.TU.Sc2ySwM_369.550 Anthoceros agrestis HOM05D005388 ORTHO05D006281 9.0e-26 121.7 81 70.4
MCO11G941 Micromonas commoda HOM05D005388 ORTHO05D006281 2.0e-25 120.6 203 35.5
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 4.5e-25 119.4 197 41.6
MSTRG.14615 Avicennia marina HOM05D005388 ORTHO05D006281 5.8e-25 119.0 130 56.2
Os08g0501132 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 7.4e-20 102.1 138 42.0
Haze_05509 Corylus avellana HOM05D005388 ORTHO05D006281 2.8e-19 100.1 156 41.0
AagrBONN_evm.TU.Sc2ySwM_369.551 Anthoceros agrestis HOM05D005388 ORTHO05D006281 3.4e-17 93.2 109 44.0
C05p30400 Brassica napus HOM05D005388 ORTHO05D006281 2.5e-12 77.0 86 45.3
TAR626G0924 Trochodendron aralioides HOM05D005388 ORTHO05D006281 2.0e-09 67.4 49 65.3
DCAR_016082 Daucus carota HOM05D005388 ORTHO05D006281 5.9e-09 65.9 49 69.4
PRCOL_00005535 Prasinoderma coloniale HOM05D005388 ORTHO05D006281 6.5e-08 62.4 149 30.2
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.6e-06 57.8 123 30.9
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 1.6e-06 57.8 191 27.2


User provided reference genes

Program Settings