Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 3.1e-111 405.2 215 100.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 2.3e-74 282.7 208 76.0
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 5.2e-74 281.6 203 75.9
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 8.8e-74 280.8 199 75.9
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.4e-73 278.9 204 73.5
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 5.4e-71 271.6 208 73.1
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 1.7e-69 266.5 201 73.1
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.2e-69 266.2 204 73.5
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 6.5e-69 264.6 203 73.9
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 7.2e-68 261.2 197 72.1
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 1.2e-67 260.4 197 73.6
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.0e-66 257.3 197 70.6
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.4e-66 256.9 196 69.9
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 6.8e-66 254.6 201 69.2
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 8.8e-66 254.2 197 69.5
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 1.5e-65 253.4 206 68.4
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.5e-65 253.4 203 70.0
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 4.4e-65 251.9 203 68.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.5e-65 251.1 206 67.0
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 7.5e-65 251.1 200 69.5
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.3e-64 250.4 200 69.0
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.7e-64 250.0 203 70.4
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 2.2e-64 249.6 205 69.3
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 2.2e-64 249.6 206 67.0
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.7e-64 248.8 206 67.0
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 3.7e-64 248.8 200 69.0
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.3e-64 248.1 206 66.5
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 6.3e-64 248.1 200 68.0
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 6.3e-64 248.1 198 70.2
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.1e-63 247.3 210 67.1
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.4e-63 246.9 216 63.4
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.8e-63 246.5 203 67.5
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.8e-63 246.5 203 66.5
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 2.4e-63 246.1 204 67.2
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 205 65.4
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 205 65.4
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 2.0e-62 243.0 204 66.2
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 2.0e-62 243.0 204 66.7
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 2.7e-62 242.7 205 65.4
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 4.5e-62 241.9 198 64.6
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 5.9e-62 241.5 202 64.4
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 7.7e-62 241.1 204 66.2
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 7.7e-62 241.1 202 65.8
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.0e-61 240.7 213 64.8
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 1.0e-61 240.7 213 63.8
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.0e-61 240.7 234 61.1
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.3e-61 240.4 211 65.9
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.3e-61 240.4 190 67.4
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.3e-61 239.6 206 66.5
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 2.9e-61 239.2 206 66.0
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 3.8e-61 238.8 197 67.5
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 5.0e-61 238.4 225 63.1
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 5.0e-61 238.4 205 67.3
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 8.6e-61 237.7 209 62.7
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 8.6e-61 237.7 201 66.2
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 1.5e-60 236.9 208 63.5
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.5e-60 236.1 211 61.6
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 4.3e-60 235.3 209 64.1
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 4.3e-60 235.3 207 64.7
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 9.5e-60 234.2 196 64.3
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 9.5e-60 234.2 209 61.7
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 1.2e-59 233.8 209 61.2
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 1.2e-59 233.8 209 61.2
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 1.6e-59 233.4 197 64.0
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.6e-59 233.4 205 64.9
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.1e-59 233.0 203 62.1
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 2.8e-59 232.6 203 61.6
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 2.8e-59 232.6 206 61.7
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 2.8e-59 232.6 201 63.2
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 3.6e-59 232.3 211 60.2
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 3.6e-59 232.3 194 63.4
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 3.6e-59 232.3 194 63.4
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 3.6e-59 232.3 213 62.4
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 4.7e-59 231.9 205 63.4
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 6.1e-59 231.5 196 67.3
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 8.0e-59 231.1 197 65.0
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.0e-58 230.7 196 63.3
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.0e-58 230.7 197 64.5
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.0e-58 230.7 197 64.5
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.4e-58 230.3 200 66.0
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 1.8e-58 229.9 203 64.5
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 2.3e-58 229.6 209 61.7
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 2.3e-58 229.6 197 63.5
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 4.0e-58 228.8 213 60.1
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 5.2e-58 228.4 204 63.2
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 8.9e-58 227.6 197 63.5
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.4e-57 225.7 197 63.5
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 4.4e-57 225.3 206 59.7
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.4e-57 225.3 197 62.9
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 5.7e-57 224.9 205 62.9
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 9.8e-57 224.2 204 61.8
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.3e-56 223.8 204 60.8
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 1.4e-55 220.3 198 60.6
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 2.4e-55 219.5 197 62.9
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 3.2e-55 219.2 201 61.7
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 7.0e-55 218.0 164 72.0
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 7.0e-55 218.0 164 72.0
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 1.6e-54 216.9 186 63.4
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 8.6e-53 211.1 193 59.6
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 7.3e-52 208.0 161 71.4
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.2e-51 207.2 201 58.7
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 4.7e-51 205.3 362 40.6
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 2.3e-50 203.0 163 65.0
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 9.8e-49 197.6 184 60.3
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 1.7e-48 196.8 154 66.9
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 2.3e-45 186.4 139 74.1
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.1e-44 184.1 185 58.9
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.9e-39 166.8 155 57.4
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 4.1e-39 165.6 117 76.1
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.7e-37 160.2 131 67.2
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.1e-36 157.5 198 44.4
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 1.9e-36 156.8 131 66.4
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.6e-35 153.7 123 70.7
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 8.1e-35 151.4 197 46.2
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 5.8e-33 145.2 115 70.4
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 3.8e-32 142.5 122 64.8
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 8.6e-29 131.3 194 44.8
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-27 127.5 134 54.5
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 8.4e-24 114.8 102 59.8
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.7e-21 107.1 74 79.7
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 3.0e-21 106.3 191 36.6
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 5.1e-21 105.5 175 40.0
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 3.1e-18 96.3 68 75.0
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 3.1e-18 96.3 126 46.8
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.4e-15 86.7 73 63.0
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 5.4e-15 85.5 86 51.2
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 9.3e-15 84.7 75 64.0
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 2.1e-14 83.6 201 31.3
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 6.0e-14 82.0 57 77.2
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 5.1e-13 79.0 60 66.7
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.8e-11 73.2 47 76.6


User provided reference genes

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